YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494159
Organism:	Plasmodium falciparum
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494159.

Description	E-value	Query Range	Subject Range
gi\|73948160 - gi\|73948160\|ref\|XP_855116.1\| PREDICTED: similar to DNA excision repair protein ERCC-1 [Canis familia...	212.0	[0..20]	[241..70]
gi\|60655939 - gi\|60655939\|gb\|AAX32533.1\| excision repair cross-complementing rodent repair deficiency complementat...	211.0	[0..23]	[241..77]
gi\|38112299 - gi\|38112299\|gb\|AAR11239.1\| excision repair protein [Pan troglodytes]	211.0	[0..23]	[241..34]
gi\|61363050, gi\|... - gi\|61363050\|gb\|AAX42326.1\| excision repair cross-complementing rodent repair deficiency complementat... ERCC1 - excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes over...	211.0	[0..23]	[241..77]
ERCC1_BOVIN - DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1	207.0	[0..19]	[241..69]
ERCC1_MOUSE - DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2	206.0	[0..23]	[241..77]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSDKEDQCN KINNNDNVTS LESINEEKKN NTNEGGESFF DNNAEQYLII SLRQKLNPVI  60
   61 KKIKRVRYKF NNIIPDFLVG KNNACLFISM KYHRLRSNYL KARIETLSNK YNNRILLCLV 120
  121 DMENIENSLG EINQLSFSFN MTLILCWSNE ECARVIEDFR IYEKKISYII KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.045757
Match:	2a1iA
Description:	Crystal Structure of the Central Domain of Human ERCC1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [173-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KISSSNQEEK IHELLKKIRC IHTTDCITLT TKFKNFKNII QAKKEDLISC SGLGIKKIQA  60
   61 LMATFNDPFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	2a1jB
Description:	Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits