YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494356
Organism:	Plasmodium falciparum
Length:	538 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494356.

Description	E-value	Query Range	Subject Range
gi\|23479061 - gi\|23479061\|gb\|EAA15992.1\| Polyprenyl synthetase, putative [Plasmodium yoelii yoelii] gi\|82540178 - gi\|82540178\|ref\|XP_724427.1\| polyprenyl synthetase [Plasmodium yoelii yoelii str. 17XNL]	399.0	[0..1]	[538..1]
gi\|68072963 - gi\|68072963\|ref\|XP_678396.1\| polyprenyl synthetase [Plasmodium berghei strain ANKA] gi\|56498851 - gi\|56498851\|emb\|CAI04198.1\| polyprenyl synthetase, putative [Plasmodium berghei]	366.0	[0..1]	[538..1]
gi\|42550814, gi\|... - gi\|46138837\|ref\|XP_391109.1\| hypothetical protein FG10933.1 [Gibberella zeae PH-1], gi\|42550814\|gb\|E...	318.0	[0..146]	[518..67]
gi\|114189247, gi... - gi\|115402649\|ref\|XP_001217401.1\| decaprenyl-diphosphate synthase subunit 1 [Aspergillus terreus NIH2...	314.0	[0..151]	[519..74]
COQ1_NEUCR - Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / ... COQ1_NEUCR - Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa GN=NCU02305 PE=3 SV=1	314.0	[0..152]	[519..81]
gi\|19887236, gi\|... - gi\|20094211\|ref\|NP_614058.1\| geranylgeranyl pyrophosphate synthase [Methanopyrus kandleri AV19], gi\|...	313.0	[0..204]	[535..3]
gi\|111068656 - gi\|111068656\|gb\|EAT89776.1\| hypothetical protein SNOG_03045 [Phaeosphaeria nodorum SN15]	311.0	[0..124]	[519..38]
gi\|62129446, gi\|... - gi\|62181813\|ref\|YP_218230.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=ispB] [protein=octaprenyl diphosphate synthase] [protein_id=YP_005239484.1] [location=3487069....	309.0	[0..175]	[536..36]
gi\|12055493 - gi\|12055493\|emb\|CAC20852.1\| geranyl diphosphat synthase [Quercus robur]	309.0	[0..112]	[536..35]
gi\|39942526, gi\|... - gi\|39942526\|ref\|XP_360800.1\| hypothetical protein MG03343.4 [Magnaporthe grisea 70-15], gb\|EAA51748....	308.0	[0..146]	[519..37]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHLSKRNNI KSFLNYCKAK YLNPLLINKN EDIIKETSIL KNNNLYSRKE SNVFIEILKS  60
   61 SFIKFRGQKI NEEINNHNNI INNSSHNNNH NIYHDTNKKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQQYEEKHNV FHTENMHKEV LLCMDVLQYE EDKVNRELHL LHSYFNKERT NIDPYTLCES  60
   61 KIKNIDEYIY NIIKTNYKNI DEFITYIYLY KGKRFRVILS ILLKNILHHI DNVSKIKTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [220-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKNRNIQRKF FKSNKLTSNY LSNKLKLYNL KITQKKNICE KTVLDNQCKI IAASEIIHMG  60
   61 SLLHDDVIDD SNKRRGVIAL HKKFGNKISI LSGDYLLARA SSIFAGTGSP KICRSFSYVV 120
  121 ESLIKGEFLQ RNLKFNNVEE ALKMYLIKSY HKTASLFSHL FACIAILSFK NDTIIQLCFN 180
  181 LGLHIGMAFQ LYDDYLDYKI DDNTNKPILN DLKNNIKTAP LLFSYNYNPQ VILQLINKNS 240
  241 YTNNDIENIL YYIQHSNSMK KNELCSLLHI KKASDILYSL ISHCNKPSTN KNNTKHDDIK 300
  301 QSSEALINLI LNVLSRNVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.39794
Match:	1ubxA
Description:	STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits