YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7459948
Organism:	Plasmodium falciparum
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7459948.

Description	E-value	Query Range	Subject Range
gi\|23508236, gi\|... - gi\|23508236\|ref\|NP_700905.1\| early transcribed membrane protein 11.2 [Plasmodium falciparum 3D7], gi...	115.0	[0..1]	[96..1]
gi\|23491389 - gi\|23491389\|gb\|EAA22932.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|83317915 - gi\|83317915\|ref\|XP_731367.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	104.0	[0..1]	[104..1]
gi\|21322697 - gi\|21322697\|emb\|CAD12773.1\| small exported protein 2 [Plasmodium berghei]	95.0	[0..1]	[102..1]
gi\|56494382 - gi\|56494382\|emb\|CAI04755.1\| conserved hypothetical protein [Plasmodium berghei] gi\|68066621 - gi\|68066621\|ref\|XP_675285.1\| hypothetical protein [Plasmodium berghei strain ANKA]	94.0	[0..1]	[102..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSKILYFF AALLALNFIA PRDYNSMVEA KPAKKLTPAE RKKRNQNIMI YSSIASAVAL  60
   61 LIGGAVGLGI HLHKNNKGDN KKGTPGAKKN DNKAVNPSIS STMYRA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.60206
Match:	PF09716.1
Description:	No description for PF09716.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits