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View Structure Prediction Details

Protein: gi|124807160, gi...
Organism: Plasmodium falciparum 3D7
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124807160, gi....

Description E-value Query
Range
Subject
Range
gi|23508203, gi|... - gi|23508203|ref|NP_700873.1| rifin [Plasmodium falciparum 3D7], gi|23495268|gb|AAN35597.1|AE014835_2...
405.0 [0..1] [346..1]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLHYCKVL LFSLPLNILV YSKNKPYITP RHTPNTTSRV LSECDINTSI YHNDPDMKSV  60
   61 KENFDRQTSQ RLREYDERLQ DKRQKRKEQR DKNIQKIIHK DKMEKKLAEK IEKGCLMC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.313 N/A N/A a.64.1 Saposin
View Download 0.298 N/A N/A b.88.1 Mss4-like
View Download 0.296 N/A N/A i.1.1 Ribosome and ribosomal fragments
View Download 0.273 N/A N/A a.74.1 Cyclin-like
View Download 0.231 N/A N/A a.47.2 t-snare proteins

Predicted Domain #2
Region A:
Residues: [119-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ACGLGSVAGS VGLLGGFGIY VSKSAALATA IAEGAETAKA AGEAARIPAA IDAVIKGITK  60
   61 VFGVSTLGVQ RLESLFTANI YNNVTMIARA INEQYNPSSC I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.631 a.156.1 S13-like H2TH domain
View Download 0.608 a.40.1 Calponin-homology domain, CH-domain
View Download 0.574 d.52.3 Prokaryotic type KH domain (KH-domain type II)
View Download 0.526 d.79.1 YjgF-like
View Download 0.517 e.37.1 Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains

Predicted Domain #3
Region A:
Residues: [220-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPIGGSGADK SICPWVMEKY LPAQNIPEMT RGGALSMNDV IETAVKSIVT DAKTVAETAA  60
   61 KKATEEAIKA STDAVESAYA ACQTAIIASV VAILVIVLVM MIIYLILRYR RKKKMNKKQQ 120
  121 YTKLLNQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle