YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6694863, gi\|1...
Organism:	Plasmodium falciparum
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6694863, gi|1....

Description	E-value	Query Range	Subject Range
gi\|23480252 - gi\|23480252\|gb\|EAA16863.1\| succinate dehydrogenase iron-sulfur subunit [Plasmodium yoelii yoelii] gi\|82594137 - gi\|82594137\|ref\|XP_725298.1\| succinate dehydrogenase iron-sulfur subunit [Plasmodium yoelii yoelii s...	275.0	[0..1]	[321..1]
gi\|68073031 - gi\|68073031\|ref\|XP_678430.1\| iron-sulfur subunit of succinate dehydrogenase, [Plasmodium berghei str... gi\|56498895 - gi\|56498895\|emb\|CAH97283.1\| iron-sulfur subunit of succinate dehydrogenase, putative [Plasmodium ber...	272.0	[0..1]	[321..1]
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	272.0	[0..42]	[300..2]
gi\|56523019 - gi\|56523019\|emb\|CAH82158.1\| iron-sulfur subunit of succinate dehydrogenase, putative [Plasmodium cha... gi\|70947835 - gi\|70947835\|ref\|XP_743495.1\| iron-sulfur subunit of succinate dehydrogenase, [Plasmodium chabaudi ch...	269.0	[0..1]	[321..1]
gi\|47222756 - gi\|47222756\|emb\|CAG01723.1\| unnamed protein product [Tetraodon nigroviridis]	263.0	[0..55]	[303..27]
gi\|113732109, gi... - gi\|167648792\|ref\|YP_001686455.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter sp. K31], ...	261.0	[0..44]	[300..4]
gi\|57044796 - gi\|57044796\|ref\|XP_535392.1\| PREDICTED: similar to Succinate dehydrogenase [ubiquinone] iron-sulfur ...	259.0	[0..33]	[303..8]
gi\|54635329, gi\|... - gi\|54635329\|gb\|EAL24732.1\| GA17170 [Drosophila pseudoobscura pseudoobscura], gi\|125806762\|ref\|XP_001... gi\|54635329\|gb\|E... - GA17170-PA [Drosophila pseudoobscura], GA17170 [Drosophila pseudoobscura pseudoobscura] gi\|194109372, gi... - gi\|195149159\|ref\|XP_002015525.1\| GL11120 [Drosophila persimilis], gi\|194109372\|gb\|EDW31415.1\| GL1112...	258.0	[0..29]	[315..8]
SdhB-PA - The gene Succinate dehydrogenase B is referred to in FlyBase by the symbol Dmel\SdhB (CG3283, FBgn00... gi\|195581026, gi... - gi\|195581026\|ref\|XP_002080335.1\| GD10425 [Drosophila simulans], gi\|194192344\|gb\|EDX05920.1\| GD10425 ... gi\|220943896, gi... - gi\|220953770\|gb\|ACL89428.1\| SdhB-PA [synthetic construct], gi\|220943896\|gb\|ACL84491.1\| SdhB-PA [synt...	257.0	[0..29]	[315..8]
SDHB_CHICK - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=...	256.0	[0..33]	[307..9]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKYELKGV MNILNKKLCN NKSRNDIIQA YTYIQKRFNN GSINKEFEMK KQVEQINKVN  60
   61 GEVVKRKKKF SIFRYNPTNK KRPQMETFEV DIDNCGPMVL DVLIKIKDEI DSTLSFRRSC 120
  121 REGICGSCAM NINGKNGLAC LTEVNRDKKE ITEIQPLPNL YVMKDLVPDL TNFYNQYKSI 180
  181 DPWLKRKTKK EKGQKEFYQS IEDRKKLDGL YECIMCASCS TSCPSYWWNP EYYLGPATLM 240
  241 QAYRWIVDSR DEYTKERLME VNDTMKLYRC HGIMNCTMCC PKGLDPAKAI KDMKNLVQEN 300
  301 FSEDTIKEHS QYIKSKMEKT K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	1zoyB
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits