YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13177563, gi\|...
Organism:	Plasmodium falciparum
Length:	583 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13177563, gi|....

Description	E-value	Query Range	Subject Range
gi\|13177565, gi\|... - gi\|13177565\|gb\|AAG17947.1\| glycerol-3-phosphate acyltransferase [Plasmodium falciparum], gi\|13177559...	614.0	[0..1]	[583..1]
gi\|82704514 - gi\|82704514\|ref\|XP_726586.1\| glycerol-3-phosphate acyltransferase [Plasmodium yoelii yoelii str. 17X... gi\|23482056 - gi\|23482056\|gb\|EAA18151.1\| glycerol-3-phosphate acyltransferase [Plasmodium yoelii yoelii]	575.0	[0..1]	[583..1]
gi\|56500310 - gi\|56500310\|emb\|CAH98829.1\| choline transporter, putative [Plasmodium berghei] gi\|68075243 - gi\|68075243\|ref\|XP_679539.1\| choline transporter [Plasmodium berghei strain ANKA]	575.0	[0..1]	[583..1]
gi\|70946484 - gi\|70946484\|ref\|XP_742952.1\| choline transporter [Plasmodium chabaudi chabaudi] gi\|56522211 - gi\|56522211\|emb\|CAH88234.1\| choline transporter, putative [Plasmodium chabaudi chabaudi]	567.0	[0..1]	[583..1]
gi\|46229273 - gi\|46229273\|gb\|EAK90122.1\| SCT1/Gpt2p-like glycerol-3-phosphate acyltransferase signal peptide plus ... gi\|66475364 - gi\|66475364\|ref\|XP_627498.1\| SCT1/Gpt2p-like glycerol-3-phosphate acyltransferase signal peptide plu...	560.0	[0..1]	[583..2]
gi\|67538858, gi\|... - gi\|67538858\|ref\|XP_663203.1\| hypothetical protein AN5599.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	552.0	[0..3]	[581..13]
gi\|67593391 - gi\|67593391\|ref\|XP_665718.1\| glycerol-3-phosphate acyltransferase [Cryptosporidium hominis TU502] gi\|54656527 - gi\|54656527\|gb\|EAL35488.1\| glycerol-3-phosphate acyltransferase [Cryptosporidium hominis]	551.0	[0..4]	[583..1]
orf19.1289 - SCT1 CGDID:CAL0003066 Assembly 19, Contig19-1739 (2464, 4776) CDS, translated using codon table 12 (... gi\|46431155, gi\|... - gi\|68492359\|ref\|XP_710056.1\| potential glycerol-3-phosphate acyltransferase [Candida albicans SC5314...	540.0	[0..4]	[568..23]
gi\|38109832, gi\|... - gi\|39951229\|ref\|XP_363365.1\| hypothetical protein MGG_01291 [Magnaporthe grisea 70-15], gb\|EAA55640....	533.0	[0..3]	[575..32]
gi\|85090897 - gi\|85090897\|ref\|XP_958638.1\| hypothetical protein NCU05985 [Neurospora crassa OR74A] gi\|28920015, gi\|... - gi\|32410719\|ref\|XP_325840.1\| hypothetical protein [Neurospora crassa], gi\|28920015\|gb\|EAA29402.1\| hy...	533.0	[0..2]	[570..63]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDFYFLIRW LCKVIVKSVF RDVNVINPEN VPLYGSVIFV GNHNNQFIDA CVLIANIPRQ  60
   61 VKFIVAEKSM RRAVIGKLAS VIGCISVKRP QDLKFKGIGH ICWNEGDVKI TGINTRFRLD 120
  121 VQIGDKLLIQ NKMFPVVKIE SETELLIQEV INIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [155-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CEDKMNGVPF KIIPKINQTE VYNLVTNSLK NGDTIGIFPE GGSHDRTNLL PLKPGVAIMT  60
   61 LCALADGIED VSIIPVGLSY SKLYQLQGCA TLFYGNAIII SQDLCKEYNN NNREAISKLL 120
  121 SKIEEGMRSC MLTSKDHETS RCIELCVSLY TPERMTI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.73
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [312-583]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKNKIYNNLQ LFCKMFWKFG NSKVIENLSY ELKCYEKLLQ ANKIKDDEVW MLKQSTSAAT  60
   61 LKFIEHICTF IFCVIFGMTF SLLWLPLVLI SIYLAERHRK AALRNSTIKI QGGDVVSSYK 120
  121 VLVLIVLLPT FNIVYGLLFS IYLYHSWLKR ILFVFLSMCI LPICYYINLN YAVQIPSLLR 180
  181 QMKILLKVIC GKINVWRDNE RELISTRHEL QLKVRDLVST LGPDVSDDFL EQLYRNIPKF 240
  241 VVDVDTKRLI RGKDEFLPIL QRSQLEYKEE IL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits