YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7339706, gi|1...
Organism: Oryza sativa Japonica Group
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7339706, gi|1....

Description E-value Query
Range
Subject
Range
Y5986_ARATH - Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
196.0 [0..111] [390..112]

Back

Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCAGSKDVT VADVYRPPPT SVSLFDISAI EEPWLIATGK KNDEEEEEED EEEEEEEEEE  60
   61 EGKKPTTTVM PLPLLDKLDG YDLAPASWSE VSKALEDIKP ALSSNTTTTE NAKKKTKKKK 120
  121 KKQPAPPPQP PTTTTTVLPE PVKAIEAAAK KAAAAPSARG ANEEVDRRPP PPELTGRRVV 180
  181 KDNPFLMRDR ENKGNDGGAA AAAARWRRRD PFEGYPERRP PGASGGGVVL YT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTLRGVRRTF EDCERARKAV EACAEAVSAA GGSPVVVDER DVSLHGEYLR ELRGLAGAGD  60
   61 APPRLFVMGR YLGGADACAE LAESG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.09691
Match: 2e7pA
Description: No description for 2e7pA was found.

Predicted Domain #3
Region A:
Residues: [318-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLREMMRWAR ARGEACAAKD GRGCEGCGGA RFVPCWECGG SCKVVAAGAT AAAADVERCA  60
   61 KCNENGLMLC PICH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.522879
Match: 1exkA
Description: Cysteine-rich domain of the chaperone protein DnaJ.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.036672061154828 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle