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View Structure Prediction Details

Protein: gi|6331695
Organism: Oryza sativa
Length: 508 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6331695.

Description E-value Query
Range
Subject
Range
CCA13_ORYSJ - Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=2 SV=2
372.0 [0..77] [508..60]
gi|162463389, gi... - pir||T02746 cyclin A-like protein CYCZM2W - maize, gi|162463389|ref|NP_001105387.1| type A-like cycl...
349.0 [0..22] [508..16]
gi|1064929, gi|7... - pir||T02967 cyclin A-type (clone30) - common tobacco, gi|1064929|emb|CAA63543.1| cyclin A-like prote...
329.0 [0..7] [508..2]
gi|70568819 - gi|70568819|dbj|BAE06271.1| cyclin A [Scutellaria baicalensis]
326.0 [0..4] [507..3]
gi|1835260 - gi|1835260|emb|CAA99990.1| mitotic cyclin [Sesbania rostrata]
321.0 [0..17] [502..1]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNLAASRR SSSSSSVAAA AAAKRPAVGE GGGGGGGKAA AGAAAAKKRV ALSNISNVAA  60
   61 GGGAPGKAGN AKLNLAASAA PVKKGSLASG RNVGTNRASA VKSASAKPAP AISRHESATQ 120
  121 KESVLPPKVP SIVPTAALAP VTVPCSSFVS PMHSGDSVS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [160-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDETMSTCDS MKSPEFEYID NGDSSSVLGS LQRRANENLR ISEDRDVEET KWKKDAPSPM  60
   61 EIDQICDVDN NY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [232-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDPQLCATLA SDIYMHLREA ETRKRPSTDF METIQKDVNP SMRAILIDWL VEVAEEYRLV  60
   61 PDTLYLTVNY IDRYLSGNEI NRQRLQLLGV ACMLIAAKYE EICAPQVEEF CYITDNTYFR 120
  121 DEVLEMEASV LNYLKFEVTA PTAKCFLRRF VRVAQVSDED PALHLEFLAN YVAELSLLEY 180
  181 NLLSYPPSLV AASAIFLAKF ILQPTKHPWN STLAHYTQYK SSELSDCVKA LHRLFSVGPG 240
  241 SNLPAIREKY TQHKYKFVAK KPCPPSIPTE FFRDATC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.30103
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle