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View Structure Prediction Details

Protein: gi|115435974, gi...
Organism: Oryza sativa Japonica Group
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115435974, gi....

Description E-value Query
Range
Subject
Range
gi|109450812 - gi|109450812|emb|CAK54360.1| putative desaturase-like protein [Trifolium repens]
680.0 [0..5] [408..2]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAMELSL LNPAAMRGLS AAKPRVVSSR RIVRFRVASS AAAPPAAKPG TPKKRGKTEI  60
   61 QETLLTPRFY TTDFD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [76-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMERLFNAEI NKQLNQEEFD ALLQEFKTDY NQTHFVRNPE FKAAADKMEG PLRQIFVEFL  60
   61 ERSCTAEFSG FLLYKELGRR LKKTNPVVAE IFSLMSRDEA RHAGFLNKGL SDFNLALDLG 120
  121 FLTKARKYTF FKPKFIFYAT YLSEKIGYWR YITIFRHLKA NPEYQVYPIF KYFENWCQDE 180
  181 NRHGDFFSAL LKAQPQFLND WKAKLWSRFF CLSVYVTMYL NDCQRTTFYE GIGLDTKEFD 240
  241 MHVIIETNRT TARIFPAVLD V

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.967
Match: 1nnqA
Description: rubrerythrin from Pyrococcus furiosus Pfu-1210814
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [337-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENPEFKRKLD RMVEINKKII AIGESDDIPL VKNLKRIPHV AALVSEIIAA YLMPPIESGS  60
   61 VDFAEFEPQL VY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle