YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2642495, gi\|1...
Organism:	Plasmodium falciparum
Length:	745 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2642495, gi|1....

Description	E-value	Query Range	Subject Range
gi\|1093612, gi\|5... - gi\|505340\|gb\|AAA66179.1\| heat shock protein 86 [Plasmodium falciparum], gi\|1093612\|prf\|\|2104278A hea...	898.0	[0..1]	[745..1]
gi\|54873686, gi\|... - gi\|54873686\|gb\|AAV41061.1\| Hsp90beta [Xenopus laevis], gi\|50603918\|gb\|AAH77195.1\| Hsp90beta protein ...	893.0	[0..2]	[745..11]
gi\|185132161, gi... - gi\|60223015\|dbj\|BAD90023.1\| heat shock 90kDa protein 1 beta isoform a [Oncorhynchus mykiss], gi\|1851...	887.0	[0..5]	[745..13]
gi\|89892739 - gi\|89892739\|gb\|AAW49253.2\| heat shock protein 90 [Liriomyza sativae]	883.0	[0..2]	[745..5]
gi\|113208383 - gi\|113208383\|dbj\|BAF03554.1\| heat shock protein 90 [Mamestra brassicae]	878.0	[0..2]	[745..11]
gi\|12005809 - gi\|12005809\|gb\|AAG44630.1\|AF254880_1 90-kDa heat shock protein HSP83 [Spodoptera frugiperda]	877.0	[0..2]	[745..11]
gi\|49899168 - gi\|49899168\|gb\|AAH75757.1\| Hsp90a.1 protein [Danio rerio]	876.0	[0..2]	[745..13]
gi\|110749824 - gi\|110749824\|ref\|XP_395168.3\| PREDICTED: similar to heat shock protein 1, alpha [Apis mellifera]	876.0	[0..3]	[745..12]

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Predicted Domain #1

Region A:
Residues: [1-745]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTETFAFNA DIRQLMSLII NTFYSNKEIF LRELISNASD ALDKIRYESI TDTQKLSAEP  60
   61 EFFIRIIPDK TNNTLTIEDS GIGMTKNDLI NNLGTIARSG TKAFMEAIQA SGDISMIGQF 120
  121 GVGFYSAYLV ADHVVVISKN NDDEQYVWES AAGGSFTVTK DETNEKLGRG TKIILHLKED 180
  181 QLEYLEEKRI KDLVKKHSEF ISFPIKLYCE RQNEKEITAS EEEEGEGEGE REGEEEEEKK 240
  241 KKTGEDKNAD ESKEENEDEE KKEDNEEDDN KTDHPKVEDV TEELENAEKK KKEKRKKKIH 300
  301 TVEHEWEELN KQKPLWMRKP EEVTNEEYAS FYKSLTNDWE DHLAVKHFSV EGQLEFKALL 360
  361 FIPKRAPFDM FENRKKRNNI KLYVRRVFIM DDCEEIIPEW LNFVKGVVDS EDLPLNISRE 420
  421 SLQQNKILKV IKKNLIKKCL DMFSELAENK ENYKKFYEQF SKNLKLGIHE DNANRTKITE 480
  481 LLRFQTSKSG DEMIGLKEYV DRMKENQKDI YYITGESINA VSNSPFLEAL TKKGFEVIYM 540
  541 VDPIDEYAVQ QLKDFDGKKL KCCTKEGLDI DDSEEAKKDF ETLKAEYEGL CKVIKDVLHE 600
  601 KVEKVVVGQR ITDSPCVLVT SEFGWSANME RIMKAQALRD NSMTSYMLSK KIMEINARHP 660
  661 IISALKQKAD ADKSDKTVKD LIWLLFDTSL LTSGFALEEP TTFSKRIHRM IKLGLSIDEE 720
  721 ENNDIDLPPL EETVDATDSK MEEVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2iopA
Description:	No description for 2iopA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits