YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33621141
Organism:	Plasmodium falciparum
Length:	313 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33621141.

Description	E-value	Query Range	Subject Range
gi\|73988677 - gi\|73988677\|ref\|XP_534084.2\| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH musc...	330.0	[0..2]	[311..50]
gi\|67968888 - gi\|67968888\|dbj\|BAE00801.1\| unnamed protein product [Macaca fascicularis] gi\|109107092 - gi\|109107092\|ref\|XP_001084747.1\| PREDICTED: lactate dehydrogenase A isoform 6 [Macaca mulatta]	329.0	[0..2]	[311..50]
gi\|55249958 - gb\|AAH86251.1\| Unknown (protein for MGC:98768) [Xenopus laevis] LDHA_MOUSE - L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3	327.0	[0..2]	[311..21]
gi\|17368677, gi\|... - gi\|17368677\|sp\|Q9BE24\|LDHA_MACFA L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M...	327.0	[0..2]	[311..21]
gi\|60653061, gi\|... - gi\|60653061\|gb\|AAX29225.1\| lactate dehydrogenase A [synthetic construct], gi\|60653059\|gb\|AAX29224.1\|...	326.0	[0..2]	[312..21]

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Predicted Domain #1

Region A:
Residues: [1-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKIALIGSG QIGAIVGELC LLENLGDLIL YDVVPGIPQG KALDLKHFST ILGVNRNILG  60
   61 TNQIEDIKDA DIIVITAGVQ RKEGMTREDL IGVNGKIMKS VAESVKLHCS KAFVICVSNP 120
  121 LDIMVNVFHK FSNLPHEKIC GMAGILDTSR YCSLIADKLK VSAEDVNAVI LGGHGDLMVP 180
  181 LQRYTSVNGV PLSEFVKKNM ISQNEIQEII QKTRNMGAEI IKLAKASAAF APAAAITKMI 240
  241 KSYLYNENNL FTCAVYLNGH YNCSNLFVGS TAKINNKGAH PVEFPLTKEE QDLYTESIAS 300
  301 VQSNTQKAFD LIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.522879
Match:	1sovA
Description:	Toxoplasma gondii bradyzoite-specific LDH (LDH2) apo form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits