YRC Public Data Repository - Protein Structure Prediction

Protein:	SODF_PLAFA
Organism:	Plasmodium falciparum
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SODF_PLAFA.

Description	E-value	Query Range	Subject Range
SODF_PSEAE - Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3 gi\|194549956, gi... - gi\|84316924\|ref\|ZP_00965382.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa C3719], gi\|2542... SODF_PSEAE - Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... gi\|194555809, gi... - gi\|84323103\|ref\|ZP_00971180.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa 2192], gi\|25424... gi\|218773685, gi... - gi\|218893457\|ref\|YP_002442326.1\| superoxide dismutase [Pseudomonas aeruginosa LESB58], gi\|218773685\|... gi\|116052400, gi... - gi\|32039580\|ref\|ZP_00137852.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa UCBPP-PA14], gi... gi\|107100050 - gi\|107100050\|ref\|ZP_01363968.1\| hypothetical protein PaerPA_01001071 [Pseudomonas aeruginosa PACS2]	303.0	[0..1]	[194..1]
gi\|94984937, gi\|... - gi\|94984937\|ref\|YP_604301.1\| superoxide dismutase [Deinococcus geothermalis DSM 11300], gi\|94555218\|...	302.0	[0..1]	[198..1]
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	300.0	[0..1]	[198..1]
gi\|229330794, gi... - gi\|229498423\|ref\|ZP_04392119.1\| Superoxide dismutase [Geobacillus sp. Y412MC52], gi\|229330794\|gb\|EEN... gi\|220706675, gi... - gi\|221089386\|ref\|ZP_03558905.1\| Superoxide dismutase [Geobacillus sp. Y412MC61], gi\|220706675\|gb\|EED... gi\|56420992, gi\|... - gi\|56420992\|ref\|YP_148310.1\| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi\|56... gi\|7578509 - gi\|7578509\|gb\|AAF64074.1\|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans] SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2	299.0	[0..1]	[198..1]
gi\|29373127 - gi\|29373127\|gb\|AAO72712.1\| Mn superoxide dismutase [Melopsittacus undulatus]	299.0	[0..3]	[197..28]
gi\|71735545, gi\|... - gi\|71735545\|ref\|YP_276190.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. phaseolicola 1448A],...	299.0	[0..1]	[194..1]
SODF_PSEPK - Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3 gi\|148546197, gi... - gi\|82736011\|ref\|ZP_00898872.1\| superoxide dismutase (Fe) [Pseudomonas putida F1], gi\|82716998\|gb\|EAP... tr\|I7B8Q8\|I7B8Q8... - Superoxide dismutase OS=Pseudomonas putida (strain DOT-T1E) GN=sodB PE=3 SV=1	298.0	[0..1]	[193..1]
gi\|213924986, gi... - gi\|213970314\|ref\|ZP_03398444.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. tomato T1], gi\|21... tr\|Q87X27\|Q87X27... - Superoxide dismutase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=sodB PE=3 SV=1 gi\|28854750, gi\|... - gi\|28871499\|ref\|NP_794118.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. tomato str. DC3000],...	297.0	[0..1]	[194..1]
gi\|35211244, gi\|... - gi\|37520251\|ref\|NP_923628.1\| superoxide dismutase [Gloeobacter violaceus PCC 7421], gi\|35211244\|dbj\|...	297.0	[0..2]	[195..112]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVITLPKLKY ALNALSPHIS EETLNFHYNK HHAGYVNKLN TLIKDTPFAE KSLLDIVKES  60
   61 SGAIFNNAAQ IWNHTFYWDS MGPDCGGEPH GEIKEKIQED FGSFNNFKEQ FSNILCGHFG 120
  121 SGWGWLALNN NNKLVILQTH DAGNPIKDNT GIPILTCDIW EHAYYIDYRN DRASYVKAWW 180
  181 NLVNWNFANE NLKKAMQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.30103
Match:	2awpA
Description:	Crystal structure of Plasmodium knowlesi structure of Iron Super-Oxide Dismutase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits