YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29834755, gi\|...
Organism:	Chlamydophila caviae GPIC
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29834755, gi|....

Description	E-value	Query Range	Subject Range
Y305_CHLMU - Uncharacterized protein TC_0305 OS=Chlamydia muridarum GN=TC_0305 PE=3 SV=1 Y305_CHLMU - Uncharacterized protein TC_0305 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0305 PE=3 SV=1	344.0	[0..4]	[250..5]
gi\|42549274, gi\|... - gi\|46127903\|ref\|XP_388505.1\| hypothetical protein FG08329.1 [Gibberella zeae PH-1], gi\|42549274\|gb\|E...	340.0	[0..2]	[252..5]
gi\|231273703, gi... - gi\|237802469\|ref\|YP_002887663.1\| putative protein ligase [Chlamydia trachomatis], gi\|231273703\|emb\|C... Y035_CHLTR - Uncharacterized protein CT_035 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_035 PE=3 SV=1 Y035_CHLTR - Uncharacterized protein CT_035 OS=Chlamydia trachomatis GN=CT_035 PE=3 SV=1 gi\|76167277, gi\|... - gi\|76788747\|ref\|YP_327833.1\| biotin--protein ligase [Chlamydia trachomatis A/HAR-13], gi\|76167277\|gb...	340.0	[0..4]	[250..3]
gi\|89898170, gi\|... - gi\|89898170\|ref\|YP_515280.1\| biotin apo-protein ligase-related protein [Chlamydophila felis Fe/C-56]...	336.0	[0..1]	[251..1]
gi\|7189558, gi\|1... - gi\|7189558\|gb\|AAF38458.1\| biotin apo-protein ligase-related protein [Chlamydophila pneumoniae AR39],... gi\|8978502, gi\|1... - gi\|8978502\|dbj\|BAA98339.1\| biotin protein ligase [Chlamydophila pneumoniae J138], gi\|15835664\|ref\|NP... gi\|15618052, gi\|... - gi\|4376392\|gb\|AAD18281.1\| Biotin Protein Ligase [Chlamydophila pneumoniae CWL029], gi\|15618052\|ref\|N... gi\|33241465, gi\|... - gi\|33241465\|ref\|NP_876406.1\| biotin--[acetyl-CoA-carboxylase] ligase [Chlamydophila pneumoniae TW-18... Y128_CHLPN - Uncharacterized protein CPn_0128/CP_0643/CPj0128/CpB0130 OS=Chlamydia pneumoniae GN=CPn_0128 PE=3 SV...	333.0	[0..1]	[256..2]
gi\|238880422 - gi\|238880422\|gb\|EEQ44060.1\| hypothetical protein CAWG_02319 [Candida albicans WO-1] orf19.7645 - orf19.7645 CGDID:CAL0000887 Assembly 19, Contig19-2518 (182803, 180806) CDS, reverse complemented, t... gi\|68473197, gi\|... - gi\|68473197\|ref\|XP_719404.1\| hypothetical protein CaO19.7645 [Candida albicans SC5314], gi\|46441220\|...	331.0	[0..4]	[252..2]
gi\|62185231, gi\|... - gi\|62185231\|ref\|YP_220016.1\| hypothetical protein CAB619 [Chlamydophila abortus S26/3], gi\|62148298\|...	324.0	[0..1]	[257..14]
gi\|28921970, gi\|... - gi\|32409781\|ref\|XP_325371.1\| hypothetical protein [Neurospora crassa], gi\|28921970\|gb\|EAA31242.1\| pr... gi\|85097606 - gi\|85097606\|ref\|XP_960478.1\| hypothetical protein NCU05516 [Neurospora crassa OR74A]	320.0	[0..3]	[256..12]
gi\|169783670 - gi\|169783670\|ref\|XP_001826297.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775041 - gi\|83775041\|dbj\|BAE65164.1\| unnamed protein product [Aspergillus oryzae]	318.0	[0..2]	[252..12]
gi\|145018672, gi... - gi\|39974835\|ref\|XP_368808.1\| hypothetical protein MGG_00436 [Magnaporthe grisea 70-15], gb\|EAA48778....	318.0	[0..2]	[252..5]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTKILIYSD AGVSPYYLRH LMRWLRSSLP SEENLEICRV DGKFLLYDPL WECTARLLII  60
   61 PGGADRPYHE TLHGLGTARI DNYVREGGSY LGICAGAYFA CKSLSFDEPD GFLYTADRGL 120
  121 GFFPGRAVGP AYGSVFSYTT PVGVRAAPLV FSNLNTYGWA LFNGGPYFEH ADAYTEICVE 180
  181 ARYEDLPEQP AAIISRRLDK GLVVLSGLHI EYLPEHCQMP EDNVVKAREI LTNATVLNQY 240
  241 RASLLSRLLR TTTPVAV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.87
Match:	1ka9H
Description:	GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.685168529972684	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: