YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29834265, gi\|...
Organism:	Chlamydophila caviae GPIC
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29834265, gi|....

Description	E-value	Query Range	Subject Range
gi\|62147860, gi\|... - gi\|62184793\|ref\|YP_219578.1\| hypothetical protein CAB148 [Chlamydophila abortus S26/3], gi\|62147860\|...	314.0	[0..1]	[264..1]
gi\|45190603, gi\|... - gi\|45190603\|ref\|NP_984857.1\| AEL004Wp [Ashbya gossypii ATCC 10895], gi\|44983582\|gb\|AAS52681.1\| AEL00... gi\|44983582 - gi\|44983582\|gb\|AAS52681.1\| AEL004Wp [Ashbya gossypii ATCC 10895]	312.0	[0..2]	[264..174]
gi\|89898664, gi\|... - gi\|89898664\|ref\|YP_515774.1\| hypothetical protein CF0857 [Chlamydophila felis Fe/C-56], gi\|89332036\|...	309.0	[0..1]	[264..1]
gi\|76167738, gi\|... - gi\|76789208\|ref\|YP_328294.1\| hypothetical protein CTA_0518 [Chlamydia trachomatis A/HAR-13], gi\|7616... gi\|255311285 - gi\|255311285\|ref\|ZP_05353855.1\| hypothetical protein Ctra62_02470 [Chlamydia trachomatis 6276] gi\|255317587 - gi\|255317587\|ref\|ZP_05358833.1\| hypothetical protein Ctra6_02465 [Chlamydia trachomatis 6276s] gi\|15605199, gi\|... - gi\|3328907\|gb\|AAC68072.1\| hypothetical protein CT_472 [Chlamydia trachomatis D/UW-3/CX], gi\|15605199... gi\|7468737, gi\|2... - pir\|\|E71509 hypothetical protein CT472 - Chlamydia trachomatis (serotype D, strain UW3/Cx), gi\|23780... gi\|237802900, gi... - gi\|237802900\|ref\|YP_002888094.1\| hypothetical protein JALI_4741 [Chlamydia trachomatis], gi\|23127413...	307.0	[0..1]	[264..1]
RMD1_YEAST - Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 RMD1 - Cytoplasmic protein required for sporulation gi\|190405021 - gi\|190405021\|gb\|EDV08288.1\| sporulation protein RMD1 [Saccharomyces cerevisiae RM11-1a] gi\|207346870 - gi\|207346870\|gb\|EDZ73232.1\| YDL001Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941989 - gi\|151941989\|gb\|EDN60345.1\| protein required for maturation and assembly of cytochrome oxidase subun...	304.0	[0..2]	[264..129]
gi\|15835371, gi\|... - gi\|7190783\|gb\|AAF39561.1\| conserved hypothetical protein [Chlamydia muridarum Nigg], gi\|15835371\|ref... gi\|11282246, gi\|... - gi\|7190783\|gb\|AAF39561.1\| conserved hypothetical protein [Chlamydia muridarum Nigg], gi\|15835371\|ref...	300.0	[0..1]	[264..1]
gi\|46124763, gi\|... - gi\|46124763\|ref\|XP_386935.1\| hypothetical protein FG06759.1 [Gibberella zeae PH-1], gi\|42554226\|gb\|E...	296.0	[0..27]	[263..281]
gi\|116207758, gi... - gi\|88183769\|gb\|EAQ91237.1\| hypothetical protein CHGG_03172 [Chaetomium globosum CBS 148.51], gi\|1162...	296.0	[0..26]	[263..283]
gi\|49646393, gi\|... - gi\|50545980\|ref\|XP_500527.1\| YALI0B05390p [Yarrowia lipolytica], gi\|49646393\|emb\|CAG82758.1\| unnamed... gi\|49646393 - gi\|49646393\|emb\|CAG82758.1\| YALI0B05390p [Yarrowia lipolytica]	294.0	[0..2]	[263..113]
gi\|46445975, gi\|... - gi\|46445975\|ref\|YP_007340.1\| hypothetical protein pc0341 [Candidatus Protochlamydia amoebophila UWE2...	292.0	[0..1]	[264..4]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCTAHCTAS SYNLHVLFHL LKTRFPTVLS REYVLVSSED PQECDKIAVF FPFGVAVFWG  60
   61 WEEFEEIKIL QSIVSASPEI LP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPEIDCYNFH YGEKLQIRRD RLILADSQLN TKLAISFGLA QSVKLTIFEA TIYKTIEDSK  60
   61 RLPQDLATKG KISMPRKAIA KKIGKLFLDK ASVNLHSDIL DEPDFFWEHP ETQPIYIDVL 120
  121 NCLDINARIN VLNHRLTILG DVLEILNDQL NHQHSSSLEW TIIWLIMLEV SVALLKDVFN 180
  181 VI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits