YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45443086, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	680 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45443086, gi|....

Description	E-value	Query Range	Subject Range
Q664F3\|Q664F3_YERPS - Oligopeptidase A - Yersinia pseudotuberculosis gi\|51598106, gi\|... - gi\|51598106\|ref\|YP_072297.1\| oligopeptidase A [Yersinia pseudotuberculosis IP 32953], gi\|51591388\|em...	0.0	[1..680]	[1..680]
gi\|238783931, gi... - gi\|77959588\|ref\|ZP_00823606.1\| COG0339: Zn-dependent oligopeptidases [Yersinia bercovieri ATCC 43970...	0.0	[1..680]	[1..680]
gi\|77963010, gi\|... - gi\|77963010\|ref\|ZP_00826824.1\| COG0339: Zn-dependent oligopeptidases [Yersinia mollaretii ATCC 43969...	0.0	[1..680]	[1..680]
gi\|77975114, gi\|... - gi\|77975114\|ref\|ZP_00830651.1\| COG0339: Zn-dependent oligopeptidases [Yersinia frederiksenii ATCC 33...	0.0	[1..680]	[1..680]
gi\|91212991, gi\|... - gi\|91212991\|ref\|YP_542977.1\| oligopeptidase A [Escherichia coli UTI89], gi\|91074565\|gb\|ABE09446.1\| o...	0.0	[1..680]	[14..693]
gi\|117675451, gi... - gi\|77631058\|ref\|ZP_00793644.1\| COG0339: Zn-dependent oligopeptidases [Yersinia pseudotuberculosis IP...	0.0	[1..679]	[1..679]
gi\|28805052, gi\|... - gi\|28896844\|ref\|NP_796449.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633], gi\|28805052\|db... gi\|28805052 - gi\|28805052\|dbj\|BAC58333.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633]	0.0	[1..679]	[1..679]
gi\|30065219, gi\|... - gi\|30065219\|ref\|NP_839390.1\| oligopeptidase A [Shigella flexneri 2a str. 2457T], gi\|30043481\|gb\|AAP1... gi\|110616881, gi... - gi\|110807333\|ref\|YP_690853.1\| oligopeptidase A [Shigella flexneri 5 str. 8401], gi\|110616881\|gb\|ABF0... gi\|56383906, gi\|... - gi\|56480355\|ref\|NP_709278.2\| oligopeptidase A [Shigella flexneri 2a str. 301], gi\|56383906\|gb\|AAN449...	0.0	[1..680]	[1..680]
gi\|124528584, gi... - gi\|124528584\|ref\|ZP_01699862.1\| Oligopeptidase A [Escherichia coli B], gi\|124500425\|gb\|EAY47898.1\| O... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... gi\|238902587, gi... - gi\|238902587\|ref\|YP_002928383.1\| oligopeptidase A [Escherichia coli BW2952], gi\|238861932\|gb\|ACR6393... gi\|226839176, gi... - gi\|254038670\|ref\|ZP_04872726.1\| oligopeptidase A [Escherichia sp. 1_1_43], gi\|226839176\|gb\|EEH71199.... gi\|89110515, gi\|... - gi\|89110515\|ref\|AP_004295.1\| oligopeptidase A [Escherichia coli str. K-12 substr. W3110], gi\|8567654... gi\|170018272, gi... - gi\|170018272\|ref\|YP_001723226.1\| oligopeptidase A [Escherichia coli ATCC 8739], gi\|169753200\|gb\|ACA7... gi\|75516039, gi\|... - gi\|75516039\|ref\|ZP_00738157.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli 53638], gi\|18... gi\|75260213, gi\|... - gi\|75260213\|ref\|ZP_00731481.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E22], gi\|1930... gi\|170684269, gi... - gi\|170684269\|ref\|YP_001745753.1\| oligopeptidase A [Escherichia coli SMS-3-5], gi\|170521987\|gb\|ACB201... gi\|194414962, gi... - gi\|75211865\|ref\|ZP_00711929.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli B171], gi\|194... gi\|170083009, gi... - gi\|170083009\|ref\|YP_001732329.1\| oligopeptidase A [Escherichia coli str. K-12 substr. DH10B], gi\|169... OPDA_ECOLI - Oligopeptidase A (EC 3.4.24.70) - Escherichia coli gi\|157162974, gi... - gi\|75197419\|ref\|ZP_00707489.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli HS], gi\|15716... gi\|218702251, gi... - gi\|218702251\|ref\|YP_002409880.1\| oligopeptidase A [Escherichia coli IAI39], gi\|218372237\|emb\|CAR2009... gi\|209914213, gi... - gi\|209920954\|ref\|YP_002295038.1\| oligopeptidase A [Escherichia coli SE11], gi\|209914213\|dbj\|BAG79287...	0.0	[1..680]	[1..680]
gi\|187730439, gi... - gi\|75179940\|ref\|ZP_00699927.1\| COG0339: Zn-dependent oligopeptidases [Shigella boydii BS512], gi\|187...	0.0	[1..680]	[1..680]

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Predicted Domain #1

Region A:
Residues: [1-680]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPLLTPFS LPPFSAIRPE DIVPAVKSAL DECRQAVERV VAQSGPFTWD NLCQPLAESD  60
   61 DRLSRIWSPV GHLNSVKNSP ELRTAYEQSL PLLSEYGTWV GQHKGLYQAY VSLKEGPGFA 120
  121 ALTAPQRKAV ENALRDFQLS GIGLAPEQQK RYGEIVARLS ELGSTYSNNV LDATMGWSKL 180
  181 ITDVEQLKGL PESALAAAKA MAEAKEQDGW LLTLDMPSYL PVLTYADNVE LREEMYRAFA 240
  241 TRASDQGPNA GKWDNSEIMA EILTLRHELA QLLGFNSYAD KSLATKMAEN PQQVLGFLND 300
  301 LAKRARPQAE EELAQLRAFA KEHYGVSELQ AWDITYYSEK QKQHLFAISD EQLRPYFPEQ 360
  361 RVVEGLFEVV KRIYGITAKE RHDVDTWHPD VRFFDLFDAD GELRGSFYLD LYARENKRGG 420
  421 AWMDDCVGSL RLANGQLQKP VAYLTCNFNG PVGGKPALFT HNEVTTLFHE FGHGLHHMLT 480
  481 KIDTAGVSGI NGVPWDAVEL PSQFMENWCW EPEALAFISG HYQTHEPLPQ EMLDKLLAAK 540
  541 NYQAALFILR QLEFGLFDFR MHYEFDPLTG AQILPILYEV KKQVAVVPSP EWGRFPHAFS 600
  601 HIFAGGYAAG YYSYLWAEVL SADAFSRFEE EGIFNAATGQ SFLDNILSQG GSEEPMTLFK 660
  661 RFRGREPQLD AMLRHYGIKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.0
Match:	2o36A
Description:	No description for 2o36A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits