YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16123836, gi\|...
Organism:	Yersinia pestis CO92
Length:	483 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16123836, gi|....

Description	E-value	Query Range	Subject Range
gi\|58336738, gi\|... - gi\|58336738\|ref\|YP_193323.1\| sucrose PTS II ABC [Lactobacillus acidophilus NCFM], gi\|58254055\|gb\|AAV... gi\|33149353 - gi\|33149353\|gb\|AAO38866.1\| sucrose PTS transporter [Lactobacillus acidophilus]	6.0E-83	[16..482]	[2..468]
gi\|77630536, gi\|... - gi\|77630536\|ref\|ZP_00793122.1\| COG1263: Phosphotransferase system IIC components, glucose/maltose/N-...	4.0E-82	[1..483]	[1..483]
gi\|24380379, gi\|... - gi\|24380379\|ref\|NP_722334.1\| putative PTS system, trehalose-specific IIABC component [Streptococcus ... gi\|21217545 - gi\|21217545\|gb\|AAM43948.1\|AF510742_2 trehalose PTS enzyme II [Streptococcus mutans]	3.0E-81	[13..475]	[1..471]
gi\|90961054, gi\|... - gi\|90961054\|ref\|YP_534970.1\| PTS system, sucrose-specific IIABC component [Lactobacillus salivarius ...	3.0E-80	[16..482]	[2..467]
gi\|116184008, gi... - gi\|75854561\|ref\|ZP_00762248.1\| COG1263: Phosphotransferase system IIC components, glucose/maltose/N-...	5.0E-80	[13..482]	[1..470]
gi\|49612462, gi\|... - gi\|50121936\|ref\|YP_051103.1\| trehalose(maltose)-specific PTS system components IIBC [Pectobacterium ...	7.0E-80	[13..475]	[3..465]
gi\|28897484, gi\|... - gi\|28897484\|ref\|NP_797089.1\| trehalose(maltose)-specific PTS system components IIBC [Vibrio parahaem... gi\|28805696 - gi\|28805696\|dbj\|BAC58973.1\| PTS system, trehalose-specific IIBC component [Vibrio parahaemolyticus R...	9.0E-80	[13..482]	[1..470]
gi\|56416227, gi\|... - gi\|56416227\|ref\|YP_153302.1\| trehalose(maltose)-specific PTS system components IIBC [Salmonella ente... gi\|197096627, gi... - gi\|197365150\|ref\|YP_002144787.1\| trehalose(maltose)-specific PTS system components IIBC [Salmonella ...	4.0E-79	[13..483]	[1..471]
gi\|229344681, gi... - gi\|229517966\|ref\|ZP_04407410.1\| PTS system trehalose-specific IIB component/PTS system trehalose-spe... gi\|229350810, gi... - gi\|229510845\|ref\|ZP_04400324.1\| PTS system trehalose-specific IIB component/PTS system trehalose-spe... gi\|254848045, gi... - gi\|254848045\|ref\|ZP_05237395.1\| trehalose(maltose)-specific PTS system components IIBC [Vibrio chole... gi\|229505485, gi... - gi\|229505485\|ref\|ZP_04394995.1\| PTS system trehalose-specific IIB component/PTS system trehalose-spe... gi\|153223403, gi... - gi\|153223403\|ref\|ZP_01953845.1\| PTS system, trehalose-specific IIBC component [Vibrio cholerae MAK 7... gi\|227008973, gi... - gi\|227081085\|ref\|YP_002809636.1\| PTS system, trehalose-specific IIBC component [Vibrio cholerae M66-... gi\|153817201, gi... - gi\|153817201\|ref\|ZP_01969868.1\| PTS system, trehalose-specific IIBC component [Vibrio cholerae NCTC ... gi\|9655367, gi\|1... - gi\|9655367\|gb\|AAF94072.1\| PTS system, trehalose-specific IIBC component [Vibrio cholerae O1 biovar E... gi\|11260440 - pir\|\|B82263 PTS system, trehalose-specific IIBC component VC0910 [imported] - Vibrio cholerae (strai... gi\|229608504, gi... - gi\|229608504\|ref\|YP_002879152.1\| PTS system trehalose-specific IIB component/PTS system trehalose-sp...	4.0E-79	[11..483]	[3..475]
gi\|238799387, gi... - gi\|77960010\|ref\|ZP_00823913.1\| COG1263: Phosphotransferase system IIC components, glucose/maltose/N-...	5.0E-79	[13..483]	[1..471]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRARNLYGKD DKMGKVKQQD IDQLIVLVGG RENIATVSHC ITRLRFVLKD PSIASPKEIE  60
   61 NLSMVKGCFT NAGQFQVVIG PEVDDYYKAL IAKIGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.221849
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [97-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEVDKEQTKL AARQNMTWFE RGISHFAEIF FPLLPALISG GLILGFRNVI GDIPMSEGKT  60
   61 LAQMYPAWQT IYDFLWLLGE AIFFYLPVAI CWSTVKKMGG TPVLGIVLGI TLVSPQLMNS 120
  121 YLLGQQLPDV WNFGWFTIEK VGYQAQVIPS ILAGLALGWI ETNLKRIIPA YLYLVVVPVV 180
  181 SLLLAVFLAH TLIGPFGRMI GDGVAWGVKA VMT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [310-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSFAPVGAAL FGFLYAPLVI TGVHQTTLAI DMQMVQSMGG TPVWPLIALS NIAQASAVLG  60
   61 IIIISRKINE REISVPAAIS AYLGVTEPAM YGINLKYRFP MLCAMIGSAL AGLICGLTGV 120
  121 MANGIGVGGL PGILSIQPQF WGIYAVAMLV AIVVPLALTI LVYKRKERRG ELPV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: