YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15981492, gi\|...
Organism:	Yersinia pestis CO92
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15981492, gi|....

Description	E-value	Query Range	Subject Range
gi\|51597806, gi\|... - gi\|51597806\|ref\|YP_071997.1\| putative BolA/YrbA family protein [Yersinia pseudotuberculosis IP 32953... Q665K3\|Q665K3_YERPS - Putative BolA/YrbA family protein - Yersinia pseudotuberculosis gi\|117672257 - gi\|117672257\|ref\|ZP_01495315.1\| hypothetical protein YpseI_02000418 [Yersinia pseudotuberculosis IP ... gi\|186896998, gi... - gi\|186896998\|ref\|YP_001874110.1\| BolA family protein [Yersinia pseudotuberculosis PB1/+], gi\|1867000... gi\|169749302, gi... - gi\|170022768\|ref\|YP_001719273.1\| BolA family protein [Yersinia pseudotuberculosis YPIII], gi\|1697493...	1.0E-26	[1..87]	[1..87]
gi\|37527881, gi\|... - gi\|37527881\|ref\|NP_931226.1\| hypothetical protein plu4029 [Photorhabdus luminescens subsp. laumondii... gi\|253991140, gi... - gi\|253991140\|ref\|YP_003042496.1\| transcriptional regulator protein yrba [Photorhabdus asymbiotica], ...	3.0E-26	[4..87]	[1..84]
gi\|85058188, gi\|... - gi\|85058188\|ref\|YP_453890.1\| hypothetical protein SG0210 [Sodalis glossinidius str. 'morsitans'], gi...	1.0E-25	[4..87]	[1..84]
gi\|77630514, gi\|... - gi\|77630514\|ref\|ZP_00793100.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	2.0E-25	[4..87]	[1..84]
gi\|238785103, gi... - gi\|77957469\|ref\|ZP_00821524.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	4.0E-25	[4..87]	[1..84]
gi\|238722109, gi... - gi\|77973400\|ref\|ZP_00828948.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi... gi\|238726940, gi... - gi\|77977077\|ref\|ZP_00832537.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	9.0E-25	[4..87]	[1..84]
gi\|238796194, gi... - gi\|77963486\|ref\|ZP_00827295.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	2.0E-24	[4..87]	[1..84]
gi\|50119260, gi\|... - gi\|50119260\|ref\|YP_048427.1\| putative bolA family protein [Pectobacterium atrosepticum SCRI1043], gi...	2.0E-24	[4..87]	[1..84]
gi\|16504373, gi\|... - gi\|25300382\|pir\|\|AC0904 conserved hypothetical protein STY3487 [imported] - Salmonella enterica subs... gi\|62181816, gi\|... - gi\|62181816\|ref\|YP_218233.1\| BolA family transcriptional regulator [Salmonella enterica subsp. enter... gi\|16762070 - gi\|16762070\|ref\|NP_457687.1\| hypothetical protein STY3487 [Salmonella enterica subsp. enterica serov... gi\|56129494, gi\|... - gi\|56415237\|ref\|YP_152312.1\| hypothetical protein SPA3175 [Salmonella enterica subsp. enterica serov... gi\|16766603, gi\|... - gi\|16766603\|ref\|NP_462218.1\| putative transcriptional regulator [Salmonella typhimurium LT2], gi\|164... gi\|29143559, gi\|... - gi\|29143559\|ref\|NP_806901.1\| hypothetical protein t3225 [Salmonella enterica subsp. enterica serovar... gi\|224585105, gi... - gi\|224585105\|ref\|YP_002638904.1\| hypothetical protein SPC_3378 [Salmonella enterica subsp. enterica ... gi\|214000944 - gi\|214000944\|ref\|ZP_03411679.1\| hypothetical protein Salmonellentericaenterica_10416 [Salmonella ent... gi\|213053030 - gi\|213053030\|ref\|ZP_03345908.1\| hypothetical protein Salmoneentericaenterica_09003 [Salmonella enter... gi\|213028329 - gi\|213028329\|ref\|ZP_03342776.1\| hypothetical protein Salmonelentericaenterica_40940 [Salmonella ente... gi\|207858556, gi... - gi\|207858556\|ref\|YP_002245207.1\| hypothetical protein SEN3141 [Salmonella enterica subsp. enterica s... gi\|205354209, gi... - gi\|205354209\|ref\|YP_002228010.1\| hypothetical protein SG3198 [Salmonella enterica subsp. enterica se... gi\|213973643 - gi\|213973643\|ref\|ZP_03400902.1\| hypothetical protein Salmonellaentericaenterica_02861 [Salmonella en... gi\|213857283 - gi\|213857283\|ref\|ZP_03384254.1\| hypothetical protein SentesT_19080 [Salmonella enterica subsp. enter... gi\|213646985 - gi\|213646985\|ref\|ZP_03377038.1\| hypothetical protein SentesTy_06556 [Salmonella enterica subsp. ente... gi\|213426649 - gi\|213426649\|ref\|ZP_03359399.1\| hypothetical protein SentesTyphi_14168 [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=yrbA] [protein=putative transcriptional regulator] [protein_id=YP_005239487.1] [location=compl... gi\|197364167, gi... - gi\|197364167\|ref\|YP_002143804.1\| hypothetical protein SSPA2963 [Salmonella enterica subsp. enterica ...	3.0E-24	[4..87]	[14..97]
gi\|218701959, gi... - gi\|218701959\|ref\|YP_002409588.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218696895, gi... - gi\|218696895\|ref\|YP_002404562.1\| putative DNA-binding transcriptional regulator [Escherichia coli 55... EG12796 - acid stress protein; putative BolA family transcriptional regulator / Acid stress protein; predicted... gi\|218691480, gi... - gi\|218691480\|ref\|YP_002399692.1\| putative DNA-binding transcriptional regulator [Escherichia coli ED... gi\|89109953, gi\|... - gi\|89109953\|ref\|AP_003733.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|218560260, gi... - gi\|218560260\|ref\|YP_002393173.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... YRBA_ECOLI - Protein yrbA - Escherichia coli gi\|218433907, gi... - gi\|218706810\|ref\|YP_002414329.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM... gi\|190905246, gi... - gi\|191174491\|ref\|ZP_03035991.1\| BolA/YrbA family protein [Escherichia coli F11], gi\|190905246\|gb\|EDV... gi\|169890559, gi... - gi\|170082724\|ref\|YP_001732044.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 s... IBAG_SHIFL - Acid stress protein IbaG OS=Shigella flexneri GN=ibaG PE=3 SV=1 gi\|169753488, gi... - gi\|170018560\|ref\|YP_001723514.1\| BolA family protein [Escherichia coli ATCC 8739], gi\|169753488\|gb\|A... gi\|218555760, gi... - gi\|218555760\|ref\|YP_002388673.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218358014, gi... - gi\|218550473\|ref\|YP_002384264.1\| putative DNA-binding transcriptional regulator [Escherichia ferguso... IBAG_ECOL6 - Acid stress protein IbaG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ibaG PE=3... gi\|215488506, gi... - gi\|215488506\|ref\|YP_002330937.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... gi\|209913924, gi... - gi\|209920665\|ref\|YP_002294749.1\| hypothetical protein ECSE_3474 [Escherichia coli SE11], gi\|20991392... EG12796 - acid stress protein; putative BolA family transcriptional regulator / Acid stress protein; predicted... gi\|251786460, gi... - gi\|251786460\|ref\|YP_003000764.1\| hypothetical protein B21_03006 [Escherichia coli BL21], gi\|24237873... gi\|238862292, gi... - gi\|238902292\|ref\|YP_002928088.1\| putative DNA-binding transcriptional regulator [Escherichia coli BW... gi\|253979189, gi... - gi\|254289882\|ref\|YP_003055630.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|253975033, gi... - gi\|254163132\|ref\|YP_003046240.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|254594539, gi... - gi\|254795139\|ref\|YP_003079976.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... YRBA_ECOL6 - Uncharacterized protein YrbA OS=Escherichia coli O6 GN=yrbA PE=3 SV=1	4.0E-24	[4..87]	[1..84]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLMDTNEIK DVLMNALALQ EAHVTGDGSH FQVIVVGELF ADMNRVKKQQ AVYAPLMEYI  60
   61 ADNRIHALSI KAYTPQEWQR DRKLNGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1ny8A
Description:	Solution structure of Protein yrbA from Escherichia Coli: Northeast Structural Genomics Consortium target ER115
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits