YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51588363, gi\|...
Organism:	Yersinia pseudotuberculosis IP 32953
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51588363, gi|....

Description	E-value	Query Range	Subject Range
gi\|28807503 - gi\|28807503\|dbj\|BAC60768.1\| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase [Vi... gi\|28899279, gi\|... - gi\|28899279\|ref\|NP_798884.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase [V... gi\|153840011, gi... - gi\|153840011\|ref\|ZP_01992678.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ...	4.0E-62	[1..159]	[1..159]
gi\|116183347, gi... - gi\|75853807\|ref\|ZP_00761565.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Vibrio ...	2.0E-61	[1..159]	[1..159]
gi\|91187824, gi\|... - gi\|91228641\|ref\|ZP_01262558.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase ...	4.0E-61	[1..159]	[1..159]
gi\|37524868, gi\|... - gi\|37524868\|ref\|NP_928212.1\| 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokina se [Photorhabdus lumi...	2.0E-60	[1..159]	[1..159]
gi\|59712775, gi\|... - gi\|59712775\|ref\|YP_205551.1\| 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [Vib...	8.0E-60	[1..159]	[1..159]
gi\|37680946, gi\|... - gi\|37680946\|ref\|NP_935555.1\| 7;8-dihydro-6-hydroxymethylpterin- pyrophosphokinase [Vibrio vulnificus...	1.0E-59	[1..159]	[1..159]
gi\|85833913, gi\|... - gi\|86148288\|ref\|ZP_01066583.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase [...	1.0E-59	[1..159]	[1..159]
gi\|27365006, gi\|... - gi\|27365006\|ref\|NP_760534.1\| 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Vibrio vulnificus ...	1.0E-59	[1..159]	[1..159]
gi\|238797184, gi... - gi\|77962796\|ref\|ZP_00826612.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Yersini...	2.0E-59	[1..159]	[1..159]
gi\|126518495, gi... - gi\|229509185\|ref\|ZP_04398670.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ... gi\|227080776, gi... - gi\|227080776\|ref\|YP_002809327.1\| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinas... gi\|229507200, gi... - gi\|229507200\|ref\|ZP_04396706.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ... gi\|229344294, gi... - gi\|229519605\|ref\|ZP_04409048.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ... gi\|229371547, gi... - gi\|229608892\|ref\|YP_002879540.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase... gi\|227116969, gi... - gi\|75825959\|ref\|ZP_00755394.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Vibrio ... gi\|121628112, gi... - gi\|75814280\|ref\|ZP_00744892.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Vibrio ... gi\|116187891, gi... - gi\|75828937\|ref\|ZP_00758264.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Vibrio ... gi\|15640614, gi\|... - gi\|9655024\|gb\|AAF93760.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [Vibri... gi\|11261002 - pir\|\|B82304 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (EC 2.7.6.3) [similari... gi\|121547118, gi... - gi\|121591047\|ref\|ZP_01678363.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ... gi\|124117831, gi... - gi\|153224133\|ref\|ZP_01954238.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ... gi\|153819888, gi... - gi\|153819888\|ref\|ZP_01972555.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ...	7.0E-59	[1..159]	[1..159]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRVYIALGS NLAMPLQQVS AAREALAHLP RSRLVACSPL YRTKPLGPQD QPDFLNAVVA  60
   61 LDTSLPPEQL LDHTQAIERN QGRVRKEQRW GPRTLDLDIM LYGDQVIKTD RLTIPHYGLK 120
  121 AREFMLYPLA DIAPDLIFPD GESLSECLKR VDKNGLVLW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.221849
Match:	1dy3A
Description:	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	5.95418117400583	bayes_pls_golite062009
diphosphotransferase activity	4.79017391246148	bayes_pls_golite062009
catalytic activity	2.44295736158702	bayes_pls_golite062009
transferase activity	1.5312510694044	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.34283740138285	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: