YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25359080
Organism:	Yersinia pestis
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25359080.

Description	E-value	Query Range	Subject Range
gi\|51595339, gi\|... - gi\|51595339\|ref\|YP_069530.1\| putative primosomal replication protein N'' [Yersinia pseudotuberculosi... Q66DQ4\|Q66DQ4_YERPS - Putative primosomal replication protein N'' - Yersinia pseudotuberculosis gi\|186894357, gi... - gi\|186894357\|ref\|YP_001871469.1\| primosomal replication priB and priC [Yersinia pseudotuberculosis P...	7.0E-43	[1..178]	[1..178]
gi\|36787138, gi\|... - gi\|37527703\|ref\|NP_931048.1\| primosomal replication factor N'' [Photorhabdus luminescens subsp. laum...	2.0E-41	[1..176]	[1..178]
gi\|238791467, gi... - gi\|77979361\|ref\|ZP_00834780.1\| COG3923: Primosomal replication protein N'' [Yersinia intermedia ATCC...	3.0E-41	[1..178]	[1..178]
gi\|238720624, gi... - gi\|77962354\|ref\|ZP_00826175.1\| COG3923: Primosomal replication protein N'' [Yersinia mollaretii ATCC...	4.0E-41	[1..178]	[1..178]
gi\|238715451, gi... - gi\|77957231\|ref\|ZP_00821292.1\| COG3923: Primosomal replication protein N'' [Yersinia bercovieri ATCC...	7.0E-41	[1..178]	[1..178]
gi\|238788046, gi... - gi\|77974267\|ref\|ZP_00829808.1\| COG3923: Primosomal replication protein N'' [Yersinia frederiksenii A...	1.0E-40	[1..178]	[1..178]
gi\|110614042, gi... - gi\|110804494\|ref\|YP_688014.1\| primosomal replication protein N'' [Shigella flexneri 5 str. 8401], gi... gi\|24111850, gi\|... - gi\|24111850\|ref\|NP_706360.1\| primosomal replication protein N'' [Shigella flexneri 2a str. 301], gi\|...	5.0E-40	[1..176]	[1..175]
gi\|82542960, gi\|... - gi\|82542960\|ref\|YP_406907.1\| primosomal replication protein N'' [Shigella boydii Sb227], gi\|81244371...	5.0E-40	[1..176]	[1..175]
gi\|192929183, gi... - gi\|75257888\|ref\|ZP_00729366.1\| COG3923: Primosomal replication protein N'' [Escherichia coli E22], g... gi\|192959044, gi... - gi\|75239037\|ref\|ZP_00723019.1\| COG3923: Primosomal replication protein N'' [Escherichia coli E110019... gi\|190902446, gi... - gi\|75229372\|ref\|ZP_00715927.1\| COG3923: Primosomal replication protein N'' [Escherichia coli B7A], g... gi\|75209777, gi\|... - gi\|75209777\|ref\|ZP_00709979.1\| COG3923: Primosomal replication protein N'' [Escherichia coli B171], ... gi\|187427512, gi... - gi\|75177589\|ref\|ZP_00697670.1\| COG3923: Primosomal replication protein N'' [Shigella boydii BS512], ... gi\|209917683, gi... - gi\|209917683\|ref\|YP_002291767.1\| primosomal replication protein N'' [Escherichia coli SE11], gi\|2099... gi\|218359801, gi... - gi\|218553033\|ref\|YP_002385946.1\| primosomal replication protein N'' [Escherichia coli IAI1], gi\|2183...	5.0E-40	[1..176]	[1..175]
gi\|74311046, gi\|... - gi\|74311046\|ref\|YP_309465.1\| primosomal replication protein N'' [Shigella sonnei Ss046], gi\|73854523...	6.0E-40	[1..176]	[1..175]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEKLLQVL ESQIEALSAQ IAPQANTPSQ QARFDLNLFS NHGNRFRDYL QEVRKNMTQL  60
   61 KQVVEENRLQ QVAFLADKLV AQISALQREL ATQKIRKSNP EPREHQSDPY HKLAEHQDYE 120
  121 RRILAMIQDR ESQLGRQSLL VEQQKIQKEL AALEGRLMRC RQALIRIERS IEKKENGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.46
Match:	1rh1A
Description:	crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits