YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22125343, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22125343, gi|....

Description	E-value	Query Range	Subject Range
gi\|166212514, gi... - gi\|166212514\|ref\|ZP_02238549.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229895698, gi... - gi\|229895698\|ref\|ZP_04510869.1\| cytochrome C-type protein NapB precursor [Yersinia pestis Pestoides ... gi\|166011142, gi... - gi\|166011142\|ref\|ZP_02232040.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229899198, gi... - gi\|229899198\|ref\|ZP_04514341.1\| cytochrome C-type protein NapB precursor [Yersinia pestis biovar Ori... gi\|167424559, gi... - gi\|167424559\|ref\|ZP_02316312.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|166958400, gi... - gi\|167422693\|ref\|ZP_02314446.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229694998, gi... - gi\|229838632\|ref\|ZP_04458791.1\| cytochrome C-type protein NapB precursor [Yersinia pestis biovar Ori... gi\|162418833, gi... - gi\|162418833\|ref\|YP_001607179.1\| diheme cytochrome c550 [Yersinia pestis Angola], gi\|162351648\|gb\|AB... gi\|145599416, gi... - gi\|145599416\|ref\|YP_001163492.1\| diheme cytochrome c550 [Yersinia pestis Pestoides F], gi\|145211112\|... gi\|161511348 - gi\|161511348\|ref\|NP_993975.2\| diheme cytochrome c550 [Yersinia pestis biovar Microtus str. 91001] gi\|165916229, gi... - gi\|165936084\|ref\|ZP_02224654.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|165921264, gi... - gi\|165926913\|ref\|ZP_02222745.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229681705, gi... - gi\|229901776\|ref\|ZP_04516898.1\| cytochrome C-type protein NapB precursor [Yersinia pestis Nepal516],... gi\|108808222, gi... - gi\|108808222\|ref\|YP_652138.1\| diheme cytochrome c550 [Yersinia pestis Antiqua], gi\|108780135\|gb\|ABG1... gi\|161484836 - gi\|161484836\|ref\|NP_668766.2\| diheme cytochrome c550 [Yersinia pestis KIM] Q668I1\|Q668I1_YERPS - Cytochrome C-type protein NapB precursor - Yersinia pseudotuberculosis gi\|51597075, gi\|... - gi\|51597075\|ref\|YP_071266.1\| diheme cytochrome c550 [Yersinia pseudotuberculosis IP 32953], gi\|51590... gi\|218930082 - gi\|218930082\|ref\|YP_002347957.1\| citrate reductase cytochrome c-type subunit [Yersinia pestis CO92] gi\|169750164, gi... - gi\|170023630\|ref\|YP_001720135.1\| citrate reductase cytochrome c-type subunit [Yersinia pseudotubercu...	8.0E-73	[1..151]	[5..155]
gi\|77960882 - gi\|77960882\|ref\|ZP_00824736.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia mollar...	6.0E-68	[1..151]	[5..155]
gi\|77977005 - gi\|77977005\|ref\|ZP_00832467.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia interm...	1.0E-66	[1..151]	[5..155]
gi\|238723681, gi... - gi\|77974598\|ref\|ZP_00830137.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia freder...	5.0E-66	[1..151]	[5..155]
gi\|238715267, gi... - gi\|77959001\|ref\|ZP_00823026.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia bercov...	5.0E-65	[1..151]	[1..151]
gi\|45442436, gi\|... - gi\|45442436\|ref\|NP_993975.1\| cytochrome C-type protein NapB precursor [Yersinia pestis biovar Microt...	8.0E-63	[19..151]	[1..133]
gi\|75196245 - gi\|75196245\|ref\|ZP_00706315.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75211619 - gi\|75211619\|ref\|ZP_00711698.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75231459 - gi\|75231459\|ref\|ZP_00717828.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75259675 - gi\|75259675\|ref\|ZP_00730977.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|81245974, gi\|... - gi\|82544563\|ref\|YP_408510.1\| cytochrome c-type protein [Shigella boydii Sb227], gi\|81245974\|gb\|ABB66... gi\|26248587, gi\|... - gi\|26248587\|ref\|NP_754627.1\| Diheme cytochrome c napB precursor [Escherichia coli CFT073], gi\|261089... gi\|227887260, gi... - gi\|227887260\|ref\|ZP_04005065.1\| periplasmic nitrate reductase electron donor subunit [Escherichia co... gi\|83588187 - gi\|83588187\|ref\|ZP_00926812.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75176165 - gi\|75176165\|ref\|ZP_00696323.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Shigella boydii... gi\|75186999 - gi\|75186999\|ref\|ZP_00700266.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col...	5.0E-62	[5..151]	[13..156]
gi\|77633174 - gi\|77633174\|ref\|ZP_00795320.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia pestis... gi\|117672971, gi... - gi\|77629803\|ref\|ZP_00792389.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia pseudo... gi\|89104826 - gi\|89104826\|ref\|ZP_01177358.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia pestis...	7.0E-62	[22..151]	[1..130]
gi\|82776194, gi\|... - gi\|82776194\|ref\|YP_402543.1\| cytochrome c-type protein [Shigella dysenteriae Sd197], gi\|81240342\|gb\|...	8.0E-62	[16..151]	[23..156]
gi\|1788531, gi\|4... - gi\|49176197\|ref\|NP_416707.3\| cytochrome c-type protein [Escherichia coli K12], gb\|AAC75263.1\| cytoch... gi\|24113589, gi\|... - ref\|NP_708099.1\| cytochrome c-type protein [Shigella flexneri 2a str. 301], gb\|AAN43806.1\| cytochro... gi\|15802756, gi\|... - gi\|15802756\|ref\|NP_288783.1\| cytochrome c-type protein [Escherichia coli O157:H7 EDL933], gi\|1251653... gi\|117624397, gi... - gi\|117624397\|ref\|YP_853310.1\| diheme cytochrome c550 [Escherichia coli APEC O1], gi\|115513521\|gb\|ABJ... gi\|91073067, gi\|... - gi\|91211493\|ref\|YP_541479.1\| cytochrome c-type protein [Escherichia coli UTI89], gi\|91073067\|gb\|ABE0... gi\|13362561 - gi\|13362561\|dbj\|BAB36515.1\| cytochrome c-type protein [Escherichia coli O157:H7 str. Sakai] gi\|75514433 - gi\|75514433\|ref\|ZP_00736711.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|74312724, gi\|... - gi\|74312724\|ref\|YP_311143.1\| cytochrome c-type protein [Shigella sonnei Ss046], gi\|73856201\|gb\|AAZ88... gi\|75237997 - gi\|75237997\|ref\|ZP_00722002.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75243019 - gi\|75243019\|ref\|ZP_00726725.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|13362561 - gi\|13362561\|dbj\|BAB36515.1\| cytochrome c-type protein [Escherichia coli O157:H7] gi\|226901042, gi... - gi\|237704676\|ref\|ZP_04535157.1\| nitrate reductase [Escherichia sp. 3_2_53FAA], gi\|226901042\|gb\|EEH87... gi\|209765752, gi... - pir\|\|A64990 diheme cytochrome napB precursor - Escherichia coli (strain K-12), pir\|\|F85859 cytochrom...	9.0E-62	[5..151]	[13..156]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLVKRRVS GVISLLAILM VMGGVNAASN VEMDLTQSPE VSGTAEGKVK MPKQQKRMAL  60
   61 NYVNQPPMIP HSVDGYQVSK NTNRCLQCHG VEHYITTGAP RVSSSHFYDR DGKVSSEVSP 120
  121 RRYFCLQCHV PQTDAAPIVG NSFQPAPGFG Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.154902
Match:	1jniA
Description:	Periplasmic nitrate reductase subunit NapB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors	12.7591230788202	bayes_pls_golite062009
nitrate reductase activity	11.6275376808252	bayes_pls_golite062009
catalytic activity	0.202301774983557	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: