YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15980807, gi\|...
Organism:	Yersinia pestis CO92
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15980807, gi|....

Description	E-value	Query Range	Subject Range
gi\|77958960 - gi\|77958960\|ref\|ZP_00822985.1\| hypothetical protein YberA_01000784 [Yersinia bercovieri ATCC 43970]	5.0E-21	[9..70]	[1..63]
gi\|89104916 - gi\|89104916\|ref\|ZP_01177446.1\| hypothetical protein Ypesb_01001078 [Yersinia pestis biovar Orientali... gi\|77629847, gi\|... - gi\|77629847\|ref\|ZP_00792433.1\| hypothetical protein YpseI_01001194 [Yersinia pseudotuberculosis IP 3... gi\|77636355 - gi\|77636355\|ref\|ZP_00798430.1\| hypothetical protein YpesA_01000322 [Yersinia pestis Angola]	3.0E-20	[17..70]	[1..54]
gi\|205337674, gi... - gi\|205359221\|ref\|ZP_02668212.2\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|205329867, gi... - gi\|205357723\|ref\|ZP_02572910.2\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|205358518, gi... - gi\|205358518\|ref\|ZP_02657112.2\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|197213842, gi... - gi\|197250139\|ref\|YP_002147459.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|204929701, gi... - gi\|204929701\|ref\|ZP_03220775.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|168817741, gi... - gi\|205344791\|gb\|EDZ31555.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|194459121, gi... - gi\|194472757\|ref\|ZP_03078741.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|168261456, gi... - gi\|205349559\|gb\|EDZ36190.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|238913643 - gi\|238913643\|ref\|ZP_04657480.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|195630868, gi... - gi\|195630868\|gb\|EDX49460.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|161362104, gi... - gi\|161612740\|ref\|YP_001586704.1\| hypothetical protein SPAB_00439 [Salmonella enterica subsp. enteric... gi\|197288898, gi... - gi\|197288898\|gb\|EDY28271.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|16421049, gi\|... - gi\|16765826\|ref\|NP_461441.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164210... lcl\|NC_016856.1_... - [gene=STM14_3071] [protein=putative inner membrane protein] [protein_id=YP_005238599.1] [location=26...	7.0E-16	[10..56]	[10..57]
gi\|208805614, gi... - gi\|208805614\|ref\|ZP_03247951.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208813084, gi... - gi\|208813084\|ref\|ZP_03254413.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208739744, gi... - gi\|208819621\|ref\|ZP_03259941.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209396892, gi... - gi\|209396892\|ref\|YP_002271974.1\| hypothetical protein ECH74115_3728 [Escherichia coli O157:H7 str. E... gi\|190906767, gi... - gi\|191172903\|ref\|ZP_03034438.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906767\|... gi\|194427264, gi... - gi\|194427264\|ref\|ZP_03059814.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194414585... gi\|194432076, gi... - gi\|194432076\|ref\|ZP_03064365.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|157161965, gi... - gi\|157161965\|ref\|YP_001459283.1\| hypothetical protein EcHS_A2641 [Escherichia coli HS], gi\|157067645... gi\|194437598, gi... - gi\|194437598\|ref\|ZP_03069694.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442340... gi\|189362237, gi... - gi\|189403143\|ref\|ZP_02793603.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189368414, gi... - gi\|189403944\|ref\|ZP_02786122.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|30042134, gi\|... - gi\|30063879\|ref\|NP_838050.1\| hypothetical protein S2700 [Shigella flexneri 2a str. 2457T], gi\|300421... gi\|189405039, gi... - gi\|189405039\|ref\|ZP_02812857.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|24052923, gi\|... - gi\|24113833\|ref\|NP_708343.1\| hypothetical protein SF2550 [Shigella flexneri 2a str. 301], gi\|2405292... gi\|189405740, gi... - gi\|189405740\|ref\|ZP_02823882.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|12516896, gi\|... - gi\|15803028\|ref\|NP_289058.1\| hypothetical protein Z3768 [Escherichia coli O157:H7 EDL933], gi\|125168... gi\|170681357, gi... - gi\|170681357\|ref\|YP_001744689.1\| hypothetical protein EcSMS35_2653 [Escherichia coli SMS-3-5], gi\|17... EG14203 - uncharacterized protein / Function unknown gi\|188489625, gi... - gi\|188494426\|ref\|ZP_03001696.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848962... gi\|124531257, gi... - gi\|124531257\|ref\|ZP_01701599.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498703\|gb... gi\|189009976, gi... - gi\|189009976\|ref\|ZP_02803477.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|189402272, gi... - gi\|189402272\|ref\|ZP_02781283.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|157081229, gi... - gi\|157159199\|ref\|YP_001463827.1\| hypothetical protein EcE24377A_2788 [Escherichia coli E24377A], gi\|... gi\|215265868, gi... - gi\|215487796\|ref\|YP_002330227.1\| hypothetical protein E2348C_2729 [Escherichia coli O127:H6 str. E23... gi\|217327927, gi... - gi\|217327927\|ref\|ZP_03444010.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YFGG_ECOLI - Hypothetical protein yfgG - Escherichia coli gi\|227835885, gi... - gi\|227887535\|ref\|ZP_04005340.1\| inner membrane protein [Escherichia coli 83972], gi\|227835885\|gb\|EEJ... YFGG_ECO57 - Uncharacterized protein YfgG OS=Escherichia coli O157:H7 GN=yfgG PE=4 SV=1 gi\|226901376, gi... - gi\|237705010\|ref\|ZP_04535491.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... YFGG_SHIFL - Uncharacterized protein YfgG OS=Shigella flexneri GN=yfgG PE=4 SV=1 gi\|91211827, gi\|... - gi\|91211827\|ref\|YP_541813.1\| hypothetical protein UTI89_C2822 [Escherichia coli UTI89], gi\|91073401\|... gi\|253772603, gi... - gi\|254289239\|ref\|YP_003054987.1\| hypothetical protein ECD_02396 [Escherichia coli BL21(DE3)], gi\|253... gi\|13362836, gi\|... - gi\|15832620\|ref\|NP_311393.1\| hypothetical protein ECs3366 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168748437, gi... - gi\|188017129\|gb\|EDU55251.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|253974379, gi... - gi\|254162478\|ref\|YP_003045586.1\| hypothetical protein ECB_02396 [Escherichia coli B str. REL606], gi... gi\|110615983, gi... - gi\|110806435\|ref\|YP_689955.1\| hypothetical protein SFV_2551 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|187770674, gi... - gi\|187770674\|gb\|EDU34518.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|238863008, gi... - gi\|238901669\|ref\|YP_002927465.1\| hypothetical protein BWG_2268 [Escherichia coli BW2952], gi\|2388630... EG14203 - uncharacterized protein / Function unknown gi\|170082114, gi... - gi\|170082114\|ref\|YP_001731434.1\| hypothetical protein ECDH10B_2670 [Escherichia coli str. K-12 subst... gi\|251785829, gi... - gi\|251785829\|ref\|YP_003000133.1\| hypothetical protein B21_02358 [Escherichia coli BL21], gi\|24237810... gi\|254794450, gi... - gi\|254794450\|ref\|YP_003079287.1\| hypothetical protein ECSP_3444 [Escherichia coli O157:H7 str. TW143... gi\|74313030, gi\|... - gi\|74313030\|ref\|YP_311449.1\| hypothetical protein SSON_2586 [Shigella sonnei Ss046], gi\|73856507\|gb\|... gi\|81242033, gi\|... - gi\|82777885\|ref\|YP_404234.1\| hypothetical protein SDY_2696 [Shigella dysenteriae Sd197], gi\|81242033... gi\|85675428, gi\|... - gi\|89109310\|ref\|AP_003090.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856...	3.0E-15	[10..57]	[10..58]
gi\|62128705, gi\|... - gi\|62181072\|ref\|YP_217489.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se...	6.0E-15	[10..56]	[10..57]
gi\|71796398, gi\|... - gi\|71892292\|ref\|YP_278026.1\| hypothetical protein BPEN_539 [Candidatus Blochmannia pennsylvanicus st...	1.0E-4	[9..55]	[13..59]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSDKTKAMR RRPSTQLTKI ILLVSFLILF GRLLYAAIAS ISHHQERQSQ QIELSVEGEP  60
   61 PGPHQTDLSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits