YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21958395, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21958395, gi|....

Description	E-value	Query Range	Subject Range
gi\|238785197, gi... - gi\|77957377\|ref\|ZP_00821435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|238718694, gi... - gi\|77960843\|ref\|ZP_00824698.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	2.0E-35	[1..169]	[1..169]
gi\|227327253 - gi\|227327253\|ref\|ZP_03831277.1\| colicin V production protein [Pectobacterium carotovorum subsp. caro... gi\|49612502, gi\|... - gi\|50121976\|ref\|YP_051143.1\| colicin V production protein [Pectobacterium atrosepticum SCRI1043], gi...	6.0E-35	[1..166]	[1..166]
gi\|77976972, gi\|... - gi\|77976972\|ref\|ZP_00832435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	8.0E-35	[1..169]	[1..169]
gi\|238710549, gi... - gi\|238751275\|ref\|ZP_04612769.1\| Colicin V production protein [Yersinia rohdei ATCC 43380], gi\|238710... gi\|77975506, gi\|... - gi\|77975506\|ref\|ZP_00831041.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	1.0E-34	[1..169]	[1..169]
gi\|37527054, gi\|... - gi\|37527054\|ref\|NP_930398.1\| colicin V production protein [Photorhabdus luminescens subsp. laumondii...	2.0E-33	[1..160]	[1..160]
gi\|52307109, gi\|... - gi\|52425057\|ref\|YP_088194.1\| CvpA protein [Mannheimia succiniciproducens MBEL55E], gi\|52307109\|gb\|AA...	1.0E-31	[19..163]	[17..161]
gi\|85059592, gi\|... - gi\|85059592\|ref\|YP_455294.1\| colicin V production protein [Sodalis glossinidius str. 'morsitans'], g...	1.0E-30	[1..162]	[1..162]
gi\|15602567, gi\|... - gi\|15602567\|ref\|NP_245639.1\| hypothetical protein PM0702 [Pasteurella multocida subsp. multocida str...	2.0E-30	[4..163]	[2..161]
gi\|68249752, gi\|... - gi\|68249752\|ref\|YP_248864.1\| colicin V production protein [Haemophilus influenzae 86-028NP], gi\|6805... gi\|229846236, gi... - gi\|229846236\|ref\|ZP_04466348.1\| colicin V production protein [Haemophilus influenzae 7P49H1], gi\|229... gi\|144986289, gi... - gi\|145633063\|ref\|ZP_01788795.1\| amidophosphoribosyltransferase [Haemophilus influenzae 3655], gi\|144...	2.0E-30	[13..163]	[11..161]
gi\|218321925, gi... - gi\|218708906\|ref\|YP_002416527.1\| Bacteriocin production protein [Vibrio splendidus LGP32], gi\|218321... gi\|85833858, gi\|... - gi\|86148375\|ref\|ZP_01066668.1\| Bacteriocin production protein [Vibrio sp. MED222], gi\|85833858\|gb\|EA...	3.0E-30	[1..163]	[1..163]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWIDYVIIG IIGFSALVSL IRGFVREALS LVTWGCAFFV ASHFYTYLAV YFTRFEDEIV  60
   61 RNGIAIGILF IATLIVGAIV NYVISSLVER TGLSGTDRVL GVCFGALRGV LIVSAMLFFL 120
  121 DTFTGFSQSV DWKQSQLIPQ FSYIIRWFFD YLQSTSSFLP NQLPIRSGL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.251812
Match:	PF02674.7
Description:	No description for PF02674.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits