YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16122605, gi\|...
Organism:	Yersinia pestis CO92
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16122605, gi|....

Description	E-value	Query Range	Subject Range
gi\|165926445, gi... - gi\|165926445\|ref\|ZP_02222277.1\| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016], gi... gi\|162420848, gi... - gi\|77633721\|ref\|ZP_00795840.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|108811999, gi... - gi\|108811999\|ref\|YP_647766.1\| ribonuclease T [Yersinia pestis Nepal516], gi\|108775647\|gb\|ABG18166.1\|... gi\|165990366, gi... - gi\|166010664\|ref\|ZP_02231562.1\| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001], gi\|16... gi\|108779636, gi... - gi\|108807723\|ref\|YP_651639.1\| ribonuclease T [Yersinia pestis Antiqua], gi\|108779636\|gb\|ABG13694.1\| ... gi\|165938652, gi... - gi\|89103795\|ref\|ZP_01176359.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|167422151, gi... - gi\|167422151\|ref\|ZP_02313904.1\| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020], g... gi\|167056127, gi... - gi\|167424940\|ref\|ZP_02316693.1\| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|166211013, gi... - gi\|166211013\|ref\|ZP_02237048.1\| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004], gi\|1... gi\|167049614, gi... - gi\|167400761\|ref\|ZP_02306267.1\| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1...	2.0E-52	[1..215]	[12..226]
RNT_YERPS - Ribonuclease T OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rnt PE=3 SV=1 RNT_YERPS - Ribonuclease T OS=Yersinia pseudotuberculosis GN=rnt PE=3 SV=1	4.0E-52	[1..214]	[1..214]
gi\|170024107, gi... - gi\|170024107\|ref\|YP_001720612.1\| ribonuclease T [Yersinia pseudotuberculosis YPIII], gi\|169750641\|gb... gi\|145209763, gi... - gi\|145598067\|ref\|YP_001162143.1\| ribonuclease T [Yersinia pestis Pestoides F], gi\|145209763\|gb\|ABP39... gi\|77629367, gi\|... - gi\|77629367\|ref\|ZP_00791953.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	3.0E-51	[1..214]	[12..225]
gi\|77959189, gi\|... - gi\|77959189\|ref\|ZP_00823211.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|77961718, gi\|... - gi\|77961718\|ref\|ZP_00825550.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	5.0E-51	[1..214]	[12..225]
gi\|238724931, gi... - gi\|77975303\|ref\|ZP_00830839.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	7.0E-51	[1..214]	[12..225]
gi\|238792291, gi... - gi\|77979562\|ref\|ZP_00834980.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	1.0E-50	[1..214]	[12..225]
RNT_PHOLL - Ribonuclease T OS=Photorhabdus luminescens subsp. laumondii GN=rnt PE=3 SV=1 RNT_PHOLL - Ribonuclease T OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) G...	5.0E-49	[1..209]	[1..209]
RNT_ECO57 - Ribonuclease T OS=Escherichia coli O157:H7 GN=rnt PE=3 SV=1 RNT_ECOL6 - Ribonuclease T OS=Escherichia coli O6 GN=rnt PE=3 SV=1 RNT_SHIFL - Ribonuclease T OS=Shigella flexneri GN=rnt PE=3 SV=1 gi\|75512914, gi\|... - gi\|75512914\|ref\|ZP_00735395.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... RNT_ECOL5 - Ribonuclease T OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rnt PE=3 SV=1 RNT_SHISS - Ribonuclease T OS=Shigella sonnei (strain Ss046) GN=rnt PE=3 SV=1 gi\|190906287, gi... - gi\|75238788\|ref\|ZP_00722772.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|192927436, gi... - gi\|75257070\|ref\|ZP_00728630.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... RNT_SHIDS - Ribonuclease T OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rnt PE=3 SV=1 RNT_ECOUT - Ribonuclease T OS=Escherichia coli (strain UTI89 / UPEC) GN=rnt PE=3 SV=1 gi\|15831615, gi\|... - gi\|15831615\|ref\|NP_310388.1\| ribonuclease T [Escherichia coli O157:H7 str. Sakai], gi\|13361828\|dbj\|B... gi\|187428733, gi... - gi\|75178452\|ref\|ZP_00698498.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... RNT_ECO24 - Ribonuclease T OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rnt PE=3 SV=1 gi\|83587986, gi\|... - gi\|83587986\|ref\|ZP_00926612.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|190904026, gi... - gi\|75230900\|ref\|ZP_00717349.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|193070264, gi... - gi\|75234963\|ref\|ZP_00719242.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... RNT_ECOHS - Ribonuclease T OS=Escherichia coli O9:H4 (strain HS) GN=rnt PE=3 SV=1 gi\|194426088, gi... - gi\|75212988\|ref\|ZP_00712986.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|218432249, gi... - gi\|218705152\|ref\|YP_002412671.1\| ribonuclease T [Escherichia coli UMN026], gi\|218432249\|emb\|CAR13139... gi\|218369766, gi... - gi\|218699780\|ref\|YP_002407409.1\| ribonuclease T [Escherichia coli IAI39], gi\|218369766\|emb\|CAR17537.... gi\|168752335, gi... - gi\|188013802\|gb\|EDU51924.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4113], gi\|168752335\|ref\|... gi\|189364907, gi... - gi\|189364907\|gb\|EDU83323.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4501], gi\|168765301\|ref\|... gi\|189354299, gi... - gi\|189354299\|gb\|EDU72718.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4401], gi\|168759015\|ref\|... gi\|168775884, gi... - gi\|187768648\|gb\|EDU32492.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4196], gi\|168775884\|ref\|... gi\|189360025, gi... - gi\|189360025\|gb\|EDU78444.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4486], gi\|168771196\|ref\|... gi\|227885930, gi... - gi\|227885930\|ref\|ZP_04003735.1\| exoribonuclease T [Escherichia coli 83972], gi\|227837109\|gb\|EEJ47575... gi\|237705597, gi... - gi\|237705597\|ref\|ZP_04536078.1\| ribonuclease T [Escherichia sp. 3_2_53FAA], gi\|226900354\|gb\|EEH86613... gi\|209157784, gi... - gi\|209396384\|ref\|YP_002270721.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4115], gi\|209157784... gi\|242377382, gi... - gi\|251785109\|ref\|YP_002999413.1\| hypothetical protein B21_01612 [Escherichia coli BL21], gi\|24237738... gi\|208740376, gi... - gi\|208820253\|ref\|ZP_03260573.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4042], gi\|208740376\|... gi\|254288503, gi... - gi\|254288503\|ref\|YP_003054251.1\| ribonuclease T [Escherichia coli BL21(DE3)], gi\|253977810\|gb\|ACT434... gi\|217318072, gi... - gi\|217328725\|ref\|ZP_03444806.1\| ribonuclease T [Escherichia coli O157:H7 str. TW14588], gi\|217318072... gi\|254161714, gi... - gi\|254161714\|ref\|YP_003044822.1\| ribonuclease T [Escherichia coli B str. REL606], gi\|253973615\|gb\|AC... gi\|209918966, gi... - gi\|209918966\|ref\|YP_002293050.1\| ribonuclease T [Escherichia coli SE11], gi\|209912225\|dbj\|BAG77299.1... gi\|254793269, gi... - gi\|254793269\|ref\|YP_003078106.1\| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359], g... gi\|218558523, gi... - gi\|218558523\|ref\|YP_002391436.1\| ribonuclease T [Escherichia coli S88], gi\|218365292\|emb\|CAR03013.1\|... gi\|218554220, gi... - gi\|218554220\|ref\|YP_002387133.1\| ribonuclease T [Escherichia coli IAI1], gi\|218360988\|emb\|CAQ98561.1... gi\|218351947, gi... - gi\|218695215\|ref\|YP_002402882.1\| ribonuclease T [Escherichia coli 55989], gi\|218351947\|emb\|CAU97679.... gi\|218427162, gi... - gi\|218689598\|ref\|YP_002397810.1\| ribonuclease T [Escherichia coli ED1a], gi\|218427162\|emb\|CAR08045.2... gi\|168789491, gi... - gi\|189370964\|gb\|EDU89380.1\| ribonuclease T [Escherichia coli O157:H7 str. EC869], gi\|168789491\|ref\|Z... gi\|168783923, gi... - gi\|188998818\|gb\|EDU67804.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4076], gi\|168783923\|ref\|... gi\|209769438, gi... - pir\|\|E85772 RNase T, degrades tRNA [imported] - Escherichia coli (strain O157:H7, substrain EDL933)... gi\|170019996, gi... - gi\|170019996\|ref\|YP_001724950.1\| ribonuclease T [Escherichia coli ATCC 8739], gi\|169754924\|gb\|ACA776... gi\|189375329, gi... - gi\|189375329\|gb\|EDU93745.1\| ribonuclease T [Escherichia coli O157:H7 str. EC508], gi\|168802776\|ref\|Z... RNT_ECOL6 - Ribonuclease T OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rnt PE=3 SV=1 gi\|195940215 - gi\|195940215\|ref\|ZP_03085597.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4024] gi\|24113043, gi\|... - gi\|24113043\|ref\|NP_707553.1\| ribonuclease T [Shigella flexneri 2a str. 301], gi\|24052011\|gb\|AAN43260... RNT_ECOK1 - Ribonuclease T OS=Escherichia coli O1:K1 / APEC GN=rnt PE=3 SV=1 gi\|170681755, gi... - gi\|170681755\|ref\|YP_001743601.1\| ribonuclease T [Escherichia coli SMS-3-5], gi\|170519473\|gb\|ACB17651... gi\|15802066, gi\|... - gi\|15802066\|ref\|NP_288088.1\| ribonuclease T [Escherichia coli O157:H7 EDL933], gi\|12515647\|gb\|AAG566... gi\|124531617, gi... - gi\|124531617\|ref\|ZP_01701828.1\| ribonuclease T [Escherichia coli B], gi\|124498472\|gb\|EAY45984.1\| rib... gi\|208731220, gi... - gi\|208816877\|ref\|ZP_03257997.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4045], gi\|208731220\|... gi\|30041420, gi\|... - gi\|30063168\|ref\|NP_837339.1\| ribonuclease T [Shigella flexneri 2a str. 2457T], gi\|30041420\|gb\|AAP171... gi\|208724980, gi... - gi\|208810464\|ref\|ZP_03252340.1\| ribonuclease T [Escherichia coli O157:H7 str. EC4206], gi\|208724980\|...	7.0E-49	[1..213]	[1..213]
gi\|85675063, gi\|... - gi\|89108494\|ref\|AP_002274.1\| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110], gi... gi\|238900868, gi... - gi\|238900868\|ref\|YP_002926664.1\| ribonuclease T (RNase T) [Escherichia coli BW2952], gi\|238863473\|gb... RNT_ECOLI - Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T) - Escherichia coli EG11547 - ribonuclease T (RNase T) / RNase T; RNA processing EG11547 - ribonuclease T (RNase T) / RNase T; RNA processing gi\|169889150, gi... - gi\|170081315\|ref\|YP_001730635.1\| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]...	2.0E-48	[1..213]	[1..213]
gi\|194434706, gi... - gi\|194434706\|ref\|ZP_03066959.1\| ribonuclease T [Shigella dysenteriae 1012], gi\|194417044\|gb\|EDX33160... RNT_SHIBS - Ribonuclease T OS=Shigella boydii serotype 4 (strain Sb227) GN=rnt PE=3 SV=1	2.0E-48	[1..213]	[1..213]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKSDLNAL SGRFRGYYPV VIDVETAGFN AQSDALLEIA AVTLQMNKEG WLLPDETLHF  60
   61 HVEPFEGANL QPEALAFNGI DPTNPLRGAV SEHDALHAIF KAVRKGIKDK GCNRAIIVAH 120
  121 NANFDHSFVM AAAERASLKR NPFHPFATFD TAALSGLVLG QTVLAKACLA AGIPFDSSQA 180
  181 HSALYDTLQT AKLFCELVNR WKKLGGWPLP AAESG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2is3A
Description:	No description for 2is3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits