YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218929440, gi...
Organism:	Yersinia pestis CO92
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218929440, gi....

Description	E-value	Query Range	Subject Range
gi\|77958053 - gi\|77958053\|ref\|ZP_00822094.1\| COG3106: Predicted ATPase [Yersinia bercovieri ATCC 43970]	854.0	[0..1]	[465..1]
gi\|123442379, gi... - gi\|123442379\|ref\|YP_001006358.1\| hypothetical protein YE2118 [Yersinia enterocolitica subsp. enteroc... gi\|10719748 - gi\|10719748\|gb\|AAG22117.1\| hypothetical protein YcjX [Yersinia enterocolitica]	852.0	[0..1]	[465..1]
gi\|186895649, gi... - gi\|186895649\|ref\|YP_001872761.1\| protein of unknown function DUF463 YcjX family protein [Yersinia ps... gi\|170024137, gi... - gi\|170024137\|ref\|YP_001720642.1\| protein of unknown function DUF463 YcjX family protein [Yersinia ps... gi\|153947022, gi... - gi\|77629337\|ref\|ZP_00791923.1\| COG3106: Predicted ATPase [Yersinia pseudotuberculosis IP 31758], gi\|...	852.0	[0..1]	[465..1]
gi\|77975340 - gi\|77975340\|ref\|ZP_00830876.1\| COG3106: Predicted ATPase [Yersinia frederiksenii ATCC 33641]	846.0	[0..1]	[465..1]
gi\|77979529 - gi\|77979529\|ref\|ZP_00834947.1\| COG3106: Predicted ATPase [Yersinia intermedia ATCC 29909]	844.0	[0..1]	[465..1]
gi\|37526473, gi\|... - gi\|37526473\|ref\|NP_929817.1\| hypothetical protein plu2582 [Photorhabdus luminescens subsp. laumondii...	832.0	[0..1]	[465..1]
gi\|254592314, gi... - gi\|254792914\|ref\|YP_003077751.1\| conserved protein with nucleoside triphosphate hydrolase domain [Es... gi\|217317680, gi... - gi\|217329241\|ref\|ZP_03445321.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|208810950, gi... - gi\|208810950\|ref\|ZP_03252783.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208731416, gi... - gi\|208814768\|ref\|ZP_03255947.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740248, gi... - gi\|208820125\|ref\|ZP_03260445.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209397259, gi... - gi\|209397259\|ref\|YP_002270381.1\| hypothetical protein ECH74115_1966 [Escherichia coli O157:H7 str. E... gi\|209771528, gi... - pir\|\|E85752 probable EC 2.1 enzymes ycjX [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|188999710, gi... - gi\|188999710\|gb\|EDU68696.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189371859, gi... - gi\|189371859\|gb\|EDU90275.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|12515445, gi\|... - gi\|15801849\|ref\|NP_287867.1\| hypothetical protein Z2458 [Escherichia coli O157:H7 EDL933], gi\|125154... gi\|189377912, gi... - gi\|189377912\|gb\|EDU96328.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|13361365, gi\|... - gi\|15831154\|ref\|NP_309927.1\| hypothetical protein ECs1900 [Escherichia coli O157:H7], gi\|13361365\|db... gi\|195937987 - gi\|195937987\|ref\|ZP_03083369.1\| hypothetical protein EscherichcoliO157_16387 [Escherichia coli O157:... gi\|189356805, gi... - gi\|189356805\|gb\|EDU75224.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189367062, gi... - gi\|189367062\|gb\|EDU85478.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168769403, gi... - gi\|189361546\|gb\|EDU79965.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|187769258, gi... - gi\|187769258\|gb\|EDU33102.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168749039, gi... - gi\|188016568\|gb\|EDU54690.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|13361365, gi\|... - gi\|15831154\|ref\|NP_309927.1\| hypothetical protein ECs1900 [Escherichia coli O157:H7 str. Sakai], gi\|...	826.0	[0..1]	[465..1]
gi\|6759973 - gi\|6759973\|gb\|AAF28131.1\|AF153317_28 YcjX [Shigella dysenteriae]	824.0	[0..1]	[465..1]
gi\|26108059, gi\|... - gi\|26247657\|ref\|NP_753697.1\| hypothetical protein c1793 [Escherichia coli CFT073], gi\|26108059\|gb\|AA...	824.0	[0..1]	[465..25]
gi\|82776685, gi\|... - gi\|82776685\|ref\|YP_403034.1\| putative YcjX [Shigella dysenteriae Sd197], gi\|81240833\|gb\|ABB61543.1\| ...	824.0	[0..1]	[465..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLQNELTS LVNRGMDRHL RLAVTGLSRS GKTAFITSLV NQLLHVHSGA RLPLFSAVRD  60
   61 ERLLGVKRVP QRDLGIQRFT YDEGLASLYG TPPNWPTPTR GVSEIRLALR FRSSDSLLRH 120
  121 FKETSTLYLE IVDYPGEWLL DLPMLEQDYL SWSRQMEGLL QGDRAEWAKP WLALCQQCDP 180
  181 LAPANENQLA AIAQAYTDYL VRCKNEGLHF IQPGRFVLPG DMAGAPALQF FPWLDVNGIG 240
  241 E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [242-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRLAQADKHS NLGMLRTRFN YYCNTIVKGF YKEHFVRFDR QIVLVDCLQP LNRGPQAFND  60
   61 MRLALTQLMQ SFHYGKRTLF RRLFSPCIDK LMFAATKADH VTADQHANLV SLLQQLVQEA 120
  121 WQNAAFEGIS MDCVGLASVQ AT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.936	a.186.1	Description not found.
View	Download	0.814	a.118.9	ENTH/VHS domain
View	Download	0.814	a.118.9	ENTH/VHS domain
View	Download	0.800	a.186.1	Description not found.
View	Download	0.789	a.46.1	Methionine synthase domain
View	Download	0.773	a.118.9	ENTH/VHS domain
View	Download	0.757	a.118.9	ENTH/VHS domain
View	Download	0.750	a.46.1	Methionine synthase domain
View	Download	0.744	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.732	a.46.1	Methionine synthase domain

Predicted Domain #3

Region A:
Residues: [384-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGMVDHQGQ KIPALRGHRL EDGAPLTVFP GDVPARLPGP AFWQQQGFHF DQFRPQAVHI  60
   61 DSPLPHIRLD AVMEFLLGDK LR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.507	N/A	N/A	d.354.1	Description not found.
View	Download	0.497	N/A	N/A	d.82.1	Copper amine oxidase, domain N
View	Download	0.482	N/A	N/A	d.224.1	SufE-like
View	Download	0.434	N/A	N/A	d.82.1	Copper amine oxidase, domain N
View	Download	0.427	N/A	N/A	b.55.1	PH domain-like
View	Download	0.426	N/A	N/A	d.224.1	SufE-like
View	Download	0.390	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.388	N/A	N/A	b.71.1	Glycosyl hydrolase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits