YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15980087, gi\|...
Organism:	Yersinia pestis CO92
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15980087, gi|....

Description	E-value	Query Range	Subject Range
MINE_PECAS - Cell division topological specificity factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC... MINE_ERWCT - Cell division topological specificity factor OS=Erwinia carotovora subsp. atroseptica GN=minE PE=3 S...	7.0E-30	[1..89]	[1..89]
gi\|77959240, gi\|... - gi\|77959240\|ref\|ZP_00823262.1\| COG0851: Septum formation topological specificity factor [Yersinia be... gi\|77962231, gi\|... - gi\|77962231\|ref\|ZP_00826054.1\| COG0851: Septum formation topological specificity factor [Yersinia mo...	2.0E-29	[1..89]	[1..89]
MINE_PHOLL - Cell division topological specificity factor OS=Photorhabdus luminescens subsp. laumondii (strain DS... MINE_PHOLL - Cell division topological specificity factor OS=Photorhabdus luminescens subsp. laumondii GN=minE PE...	2.0E-28	[1..89]	[1..89]
MINE_SODGM - Cell division topological specificity factor OS=Sodalis glossinidius (strain morsitans) GN=minE PE=3...	8.0E-28	[1..89]	[1..89]
gi\|205350611, gi... - gi\|205350611\|gb\|EDZ37242.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168462692, gi... - gi\|195634450\|gb\|EDX52802.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168820565, gi... - gi\|205342772\|gb\|EDZ29536.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALNS - Cell division topological specificity factor OS=Salmonella newport (strain SL254) GN=minE PE=3 SV=1 gi\|167993268, gi... - gi\|205328653\|gb\|EDZ15417.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205331758, gi... - gi\|205331758\|gb\|EDZ18522.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|197289206, gi... - gi\|197289206\|gb\|EDY28573.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205339227, gi... - gi\|205339227\|gb\|EDZ25991.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis (strain SC-B67) GN=minE PE=3... MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A GN=minE PE=3 SV=1 MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) G... gi\|213580025 - gi\|213580025\|ref\|ZP_03361851.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 gi\|213609542 - gi\|213609542\|ref\|ZP_03369368.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|214002609 - gi\|214002609\|ref\|ZP_03413344.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPC - Cell division topological specificity factor OS=Salmonella paratyphi C (strain RKS4594) GN=minE PE=3... lcl\|NC_016856.1_... - [gene=minE] [protein=cell division topological specificity factor MinE] [protein_id=YP_005237754.1] ... MINE_SALG2 - Cell division topological specificity factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) G... MINE_SALEP - Cell division topological specificity factor OS=Salmonella enteritidis PT4 (strain P125109) GN=minE ... gi\|213052595 - gi\|213052595\|ref\|ZP_03345473.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|213426610 - gi\|213426610\|ref\|ZP_03359360.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|197262920, gi... - gi\|197262920\|ref\|ZP_03162994.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALPK - Cell division topological specificity factor OS=Salmonella paratyphi A (strain AKU_12601) GN=minE PE... MINE_SALAR - Cell division topological specificity factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86... MINE_SALDC - Cell division topological specificity factor OS=Salmonella dublin (strain CT_02021853) GN=minE PE=3 ... gi\|200390793, gi... - gi\|200390793\|ref\|ZP_03217404.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALHS - Cell division topological specificity factor OS=Salmonella heidelberg (strain SL476) GN=minE PE=3 SV... gi\|194469036, gi... - gi\|194469036\|ref\|ZP_03075020.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALSV - Cell division topological specificity factor OS=Salmonella schwarzengrund (strain CVM19633) GN=minE ... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALA4 - Cell division topological specificity factor OS=Salmonella agona (strain SL483) GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|238912119 - gi\|238912119\|ref\|ZP_04655956.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|227333438, gi... - gi\|228555198\|gb\|EEK19863.1\| hypothetical protein CIT292_03020 [Citrobacter youngae ATCC 29220], gi\|2... gi\|283785538\|ref... - Cell division topological specificity factor [Citrobacter rodentium ICC168] MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC... gi\|29141536, gi\|... - gi\|29141536\|ref\|NP_804878.1\| cell division topological specificity factor MinE [Salmonella enterica ... gi\|16760706 - gi\|16760706\|ref\|NP_456323.1\| cell division topological specificity factor MinE [Salmonella enterica ...	2.0E-27	[1..87]	[1..87]
gi\|30062691, gi\|... - gi\|30062691\|ref\|NP_836862.1\| cell division topological specificity factor MinE [Shigella flexneri 2a... MINE_ECO57 - Cell division topological specificity factor OS=Escherichia coli O157:H7 GN=minE PE=3 SV=1 EG10598 - cell division topological specificity factor / Blocks MinCD inhibition of FtsZ polymerization at cel... EG10598 - cell division topological specificity factor / Blocks MinCD inhibition of FtsZ polymerization at cel... gi\|73671289\|gb\|A... - MinE [Escherichia coli] gi\|15801396, gi\|... - gi\|15801396\|ref\|NP_287413.1\| cell division topological specificity factor MinE [Escherichia coli O15... MINE_ECOL6 - Cell division topological specificity factor OS=Escherichia coli O6 GN=minE PE=3 SV=1 MINE_ECOLI - Cell division topological specificity factor - Escherichia coli gi\|227836619, gi... - gi\|227886415\|ref\|ZP_04004220.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|237705126, gi... - gi\|237705126\|ref\|ZP_04535607.1\| cell division topological specificity factor MinE [Escherichia sp. 3... gi\|187766766, gi... - gi\|187766766\|gb\|EDU30610.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|189356333, gi... - gi\|189356333\|gb\|EDU74752.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|189372420, gi... - gi\|189372420\|gb\|EDU90836.1\| cell division topological specificity factor MinE [Escherichia coli O157... gi\|188999951, gi... - gi\|188999951\|gb\|EDU68937.1\| cell division topological specificity factor MinE [Escherichia coli O157... MINE_ECOSM - Cell division topological specificity factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=minE PE... MINE_ECODH - Cell division topological specificity factor OS=Escherichia coli (strain K12 / DH10B) GN=minE PE=3 S... gi\|217318601, gi... - gi\|217328174\|ref\|ZP_03444256.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_ECO27 - Cell division topological specificity factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN... MINE_ECO45 - Cell division topological specificity factor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=minE... MINE_ECO8A - Cell division topological specificity factor OS=Escherichia coli O8 (strain IAI1) GN=minE PE=3 SV=1 MINE_ECO55 - Cell division topological specificity factor OS=Escherichia coli (strain 55989 / EAEC) GN=minE PE=3 ... MINE_ECO81 - Cell division topological specificity factor OS=Escherichia coli O81 (strain ED1a) GN=minE PE=3 SV=1 MINE_ECOLU - Cell division topological specificity factor OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)... MINE_ECO7I - Cell division topological specificity factor OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=min... MINE_SHIBS - Cell division topological specificity factor OS=Shigella boydii serotype 4 (strain Sb227) GN=minE PE... gi\|194416943, gi... - gi\|194434828\|ref\|ZP_03067077.1\| cell division topological specificity factor MinE [Shigella dysenter... MINE_ECOK1 - Cell division topological specificity factor OS=Escherichia coli O1:K1 / APEC GN=minE PE=3 SV=1 gi\|170122860, gi... - gi\|170768094\|ref\|ZP_02902547.1\| cell division topological specificity factor MinE [Escherichia alber... MINE_SHISS - Cell division topological specificity factor OS=Shigella sonnei (strain Ss046) GN=minE PE=3 SV=1 gi\|124498084, gi... - gi\|124532299\|ref\|ZP_01702193.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208806085, gi... - gi\|208806085\|ref\|ZP_03248422.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_SHIDS - Cell division topological specificity factor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mi... gi\|195938827 - gi\|195938827\|ref\|ZP_03084209.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208822719, gi... - gi\|208822719\|ref\|ZP_03263038.1\| cell division topological specificity factor MinE [Escherichia coli ... gi\|208732686, gi... - gi\|208816038\|ref\|ZP_03257217.1\| cell division topological specificity factor MinE [Escherichia coli ... MINE_ECOLC - Cell division topological specificity factor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Croo... MINE_ECOSE - Cell division topological specificity factor OS=Escherichia coli (strain SE11) GN=minE PE=3 SV=1 MINE_ECO5E - Cell division topological specificity factor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=m... gi\|75209224, gi\|... - gi\|75209224\|ref\|ZP_00709471.1\| COG0851: Septum formation topological specificity factor [Escherichia... MINE_ECOBW - Cell division topological specificity factor OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=m... gi\|193071663, gi... - gi\|75214765\|ref\|ZP_00713260.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|251784682, gi... - gi\|251784682\|ref\|YP_002998986.1\| hypothetical protein B21_01159 [Escherichia coli BL21], gi\|24237695... MINE_ECO24 - Cell division topological specificity factor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN... gi\|253324871, gi... - gi\|254288065\|ref\|YP_003053813.1\| cell division topological specificity factor MinE [Escherichia coli... MINE_ECOHS - Cell division topological specificity factor OS=Escherichia coli O9:H4 (strain HS) GN=minE PE=3 SV=1 gi\|253973158, gi... - gi\|254161257\|ref\|YP_003044365.1\| cell division topological specificity factor MinE [Escherichia coli... gi\|75255652, gi\|... - gi\|75255652\|ref\|ZP_00727424.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|254592051, gi... - gi\|254792651\|ref\|YP_003077488.1\| cell division topological specificity factor [Escherichia coli O157... gi\|188487093, gi... - gi\|75511644\|ref\|ZP_00734291.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|75227594, gi\|... - gi\|75227594\|ref\|ZP_00714347.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|191170938, gi... - gi\|75241977\|ref\|ZP_00725771.1\| COG0851: Septum formation topological specificity factor [Escherichia... gi\|83587319, gi\|... - gi\|83587319\|ref\|ZP_00925947.1\| COG0851: Septum formation topological specificity factor [Escherichia... MINE_SHIFL - Cell division topological specificity factor OS=Shigella flexneri GN=minE PE=3 SV=1 MINE_SHIB3 - Cell division topological specificity factor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS... gi\|24051457, gi\|... - gi\|24112560\|ref\|NP_707070.1\| cell division topological specificity factor MinE [Shigella flexneri 2a... MINE_ECOL6 - Cell division topological specificity factor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|89108019, gi\|... - gi\|89108019\|ref\|AP_001799.1\| cell division topological specificity factor [Escherichia coli str. K-1... MINE_ECOUT - Cell division topological specificity factor OS=Escherichia coli (strain UTI89 / UPEC) GN=minE PE=3 ... gi\|15830922, gi\|... - gi\|15830922\|ref\|NP_309695.1\| cell division topological specificity factor MinE [Escherichia coli O15... sp\|B7UQ59\|MINE_ECO27 - Cell division topological specificity factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN... MINE_ECOL5 - Cell division topological specificity factor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=m... MINE_SHIF8 - Cell division topological specificity factor OS=Shigella flexneri serotype 5b (strain 8401) GN=minE ...	4.0E-27	[1..86]	[1..86]
gi\|95109614 - gi\|95109614\|emb\|CAK14315.1\| cell division topological specificity factor MinE [Pseudomonas entomophi... MINE_PSEE4 - Cell division topological specificity factor OS=Pseudomonas entomophila (strain L48) GN=minE PE=3 SV...	1.0E-26	[1..83]	[1..83]
tr\|I7B9M4\|I7B9M4... - Cell division topological specificity factor OS=Pseudomonas putida (strain DOT-T1E) GN=minE PE=3 SV=... MINE_PSEP1 - Cell division topological specificity factor OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=minE... MINE_PSEPK - Cell division topological specificity factor OS=Pseudomonas putida (strain KT2440) GN=minE PE=3 SV=1 tr\|E4REQ1\|E4REQ1... - Cell division topological specificity factor OS=Pseudomonas putida (strain BIRD-1) GN=minE PE=3 SV=1 MINE_PSEPG - Cell division topological specificity factor OS=Pseudomonas putida (strain GB-1) GN=minE PE=3 SV=1	2.0E-26	[1..83]	[1..83]
MINE_PSEPF - Cell division topological specificity factor OS=Pseudomonas fluorescens (strain Pf0-1) GN=minE PE=3 ...	4.0E-26	[1..83]	[1..83]
MINE_BUCAI - Cell division topological specificity factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mi... MINE_BUCAT - Cell division topological specificity factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (stra... gi\|311087220\|gb\|... - cell division topological specificity factor MinE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisu... gi\|311087741\|gb\|... - cell division topological specificity factor MinE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisu... gi\|311086637\|gb\|... - cell division topological specificity factor MinE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pis... gi\|25300140 - gi\|25300140\|pir\|\|A84968 cell division topological specificity factor [imported] - Buchnera sp. (stra... MINE_BUCAI - Cell division topological specificity factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (stra... gi\|311086063\|gb\|... - cell division topological specificity factor MinE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisu...	4.0E-26	[1..83]	[1..83]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLDFFLSR KKPTANIAKE RLQIIVAERR RGDSEPHYLP DLKRDILAVI CKYIQIDPEM  60
   61 LHVQFEQKGD DISVLELNVT LPETEETPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1ev0A
Description:	Cell division protein MinE topological specificity domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits