YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115347560, gi...
Organism:	Yersinia pestis CO92
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115347560, gi....

Description	E-value	Query Range	Subject Range
Q66BR9\|Q66BR9_YERPS - Flagellar assembly protein FliH - Yersinia pseudotuberculosis gi\|169751152, gi... - gi\|170024618\|ref\|YP_001721123.1\| flagellar assembly protein H [Yersinia pseudotuberculosis YPIII], g... gi\|51589319, gi\|... - gi\|51596037\|ref\|YP_070228.1\| flagellar assembly protein H [Yersinia pseudotuberculosis IP 32953], gi...	193.0	[0..1]	[238..1]
gi\|22126361, gi\|... - gi\|22126361\|ref\|NP_669784.1\| flagellar assembly protein [Yersinia pestis KIM], gi\|21959345\|gb\|AAM860... gi\|45436242, gi\|... - gi\|45441382\|ref\|NP_992921.1\| flagellar assembly protein [Yersinia pestis biovar Microtus str. 91001]...	192.0	[0..1]	[238..8]
gi\|229680278, gi... - gi\|229902831\|ref\|ZP_04517948.1\| flagellar assembly protein FliH [Yersinia pestis Nepal516], gi\|22968...	191.0	[0..1]	[238..1]
gi\|77975708 - gi\|77975708\|ref\|ZP_00831242.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y...	189.0	[0..1]	[238..1]
gi\|36785298, gi\|... - gi\|37525869\|ref\|NP_929213.1\| flagellar assembly protein H [Photorhabdus luminescens subsp. laumondii...	186.0	[0..1]	[238..1]
gi\|77957925 - gi\|77957925\|ref\|ZP_00821968.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y...	183.0	[0..1]	[238..1]
gi\|77961117 - gi\|77961117\|ref\|ZP_00824963.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y...	183.0	[0..1]	[238..1]
gi\|77979918 - gi\|77979918\|ref\|ZP_00835334.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y...	182.0	[0..1]	[238..1]
gi\|194713661, gi... - gi\|194738159\|ref\|YP_002115005.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enteric... gi\|194472739, gi... - gi\|194472739\|ref\|ZP_03078723.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica... gi\|194403678, gi... - gi\|194445015\|ref\|YP_002041236.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enteric... gi\|205340688, gi... - gi\|205340688\|gb\|EDZ27452.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|204320005, gi... - gi\|204930961\|ref\|ZP_03221787.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica... gi\|198245604, gi... - gi\|198245604\|ref\|YP_002215115.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enteric... gi\|197262069, gi... - gi\|197262069\|ref\|ZP_03162143.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica... gi\|197214719, gi... - gi\|197251016\|ref\|YP_002146052.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enteric... gi\|167552797, gi... - gi\|205322656\|gb\|EDZ10495.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|195634122, gi... - gi\|195634122\|gb\|EDX52474.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|205350648, gi... - gi\|205350648\|gb\|EDZ37279.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|168239211, gi... - gi\|197288031\|gb\|EDY27418.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|205331892, gi... - gi\|205331892\|gb\|EDZ18656.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|213585981 - gi\|213585981\|ref\|ZP_03367807.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica se... gi\|213425003 - gi\|213425003\|ref\|ZP_03357753.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica se... gi\|206708319, gi... - gi\|207856516\|ref\|YP_002243167.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica s... gi\|205352335, gi... - gi\|205352335\|ref\|YP_002226136.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica s... gi\|29137020, gi\|... - gi\|29141393\|ref\|NP_804735.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica serov... gi\|16760915 - gi\|16760915\|ref\|NP_456532.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica serov... gi\|214003009 - gi\|214003009\|ref\|ZP_03413744.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica se... gi\|25512301, gi\|... - gi\|25512301\|pir\|\|AD0752 flagellar assembly protein FliH [imported] - Salmonella enterica subsp. ente... gi\|213855156 - gi\|213855156\|ref\|ZP_03383396.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica se...	174.0	[0..6]	[238..3]
FLIH_SALTY - Flagellar assembly protein fliH OS=Salmonella typhimurium GN=fliH PE=3 SV=2 gi\|205328418, gi... - gi\|205328418\|gb\|EDZ15182.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|62128179, gi\|... - gi\|62180546\|ref\|YP_216963.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica serov... FLIH_SALTY - Flagellar assembly protein fliH OS=Salmonella typhimurium GN=fliH PE=3 SV=2 gi\|224468057, gi... - gi\|224583530\|ref\|YP_002637328.1\| flagellar assembly protein [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=fliH] [protein=flagellar assembly protein H] [protein_id=YP_005237941.1] [location=2070607..20... gi\|194407917, gi... - gi\|194449613\|ref\|YP_002046022.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica s... FLIH_SALTY - Flagellar assembly protein FliH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=f... gi\|205336390, gi... - gi\|205336390\|gb\|EDZ23154.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser...	174.0	[0..6]	[238..3]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRINALPW QPWSLKDFAS QSEAPLSESM PDISLLFPNE PMEATAAVDE QQVLVNLQLE  60
   61 AEKQGRQQGF AKGLQEGLDK GYQTGLEEGH QQALADAQQQ LAPMTAHWQV MVTDFQNTLD 120
  121 TLDSVIASRL VQI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.956	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.919	N/A	N/A	a.238.1	Description not found.
View	Download	0.915	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.915	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.885	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.876	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.876	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.758	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.755	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.738	N/A	N/A	a.2.7	tRNA-binding arm

Predicted Domain #2

Region A:
Residues: [134-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALAAAKQIIG QPAICDGTAL LAQIQQMIQQ EPMFAGKTQL RVNPDDLAIV EQRLGSTLSL  60
   61 HGWRLLGDSQ IHAGGCKVSA EEGDLDASLA TRWHELCRLA APGEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits