YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21959383, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21959383, gi|....

Description	E-value	Query Range	Subject Range
gi\|1588994 - gi\|1588994\|prf\|\|2209422B flgM gene	7.0E-21	[3..99]	[2..98]
gi\|238788310, gi... - gi\|77975731\|ref\|ZP_00831265.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	3.0E-20	[3..99]	[2..98]
gi\|77979941, gi\|... - gi\|77979941\|ref\|ZP_00835357.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	5.0E-20	[3..100]	[2..99]
gi\|67544017, gi\|... - gi\|67544017\|ref\|ZP_00421947.1\| hypothetical protein Bcep1808DRAFT_5961 [Burkholderia vietnamiensis G...	3.0E-19	[1..98]	[75..175]
gi\|77957057, gi\|... - gi\|77957057\|ref\|ZP_00821124.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	3.0E-18	[3..99]	[2..98]
gi\|238799102, gi... - gi\|77960290\|ref\|ZP_00824169.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	5.0E-18	[3..99]	[2..98]
gi\|213028519 - gi\|213028519\|ref\|ZP_03342966.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|25512453, gi\|... - gi\|25512453\|pir\|\|AE0639 negative regulator of flagellin synthesis (anti-sigma factor) STY1211 [impor... gi\|29142181, gi\|... - gi\|29142181\|ref\|NP_805523.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serovar T... gi\|16760048 - gi\|16760048\|ref\|NP_455665.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serovar T... gi\|214002351 - gi\|214002351\|ref\|ZP_03413086.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213648921 - gi\|213648921\|ref\|ZP_03378974.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213616005 - gi\|213616005\|ref\|ZP_03371831.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213980484 - gi\|213980484\|ref\|ZP_03407743.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213865510 - gi\|213865510\|ref\|ZP_03387629.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213417744 - gi\|213417744\|ref\|ZP_03350862.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213161849 - gi\|213161849\|ref\|ZP_03347559.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213585152 - gi\|213585152\|ref\|ZP_03366978.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|213424675 - gi\|213424675\|ref\|ZP_03357440.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova...	2.0E-17	[3..99]	[2..96]
gi\|78067842, gi\|... - gi\|78067842\|ref\|YP_370611.1\| putative anti-sigma-28 factor, FlgM [Burkholderia sp. 383], gi\|77968587...	3.0E-17	[1..98]	[3..103]

Back

Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIDRTQPL SPVTQVQARE SHDVAQQTRQ SATQTKTPVS GTEVKLSDAQ AKLMQPGSQD  60
   61 INVERVETLK QAIRSGQLTM DTGKIADALL KNVADELKNH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.63
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits