YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25287787
Organism:	Yersinia pestis
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25287787.

Description	E-value	Query Range	Subject Range
gi\|77959075, gi\|... - gi\|77959075\|ref\|ZP_00823098.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	0.0	[4..295]	[1..293]
gi\|77961558 - gi\|77961558\|ref\|ZP_00825392.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	0.0	[4..295]	[1..293]
PTND_ECOL6 - Mannose permease IID component OS=Escherichia coli O6 GN=manZ PE=3 SV=1 gi\|117623978, gi... - gi\|117623978\|ref\|YP_852891.1\| mannose-specific PTS system protein IID [Escherichia coli APEC O1], gi... PTND_ECOLI - Mannose permease IID component (PTS system mannose-specific EIID component) (EIID-Man) (EII-M-Man) -... gi\|169889309, gi... - gi\|170081474\|ref\|YP_001730794.1\| mannose-specific enzyme IID component of PTS [Escherichia coli str.... PTND_ECOL6 - Mannose permease IID component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=man... PTND_ECO57 - Mannose permease IID component OS=Escherichia coli O157:H7 GN=manZ PE=3 SV=1 gi\|12515862, gi\|... - gi\|15802232\|ref\|NP_288255.1\| mannose-specific PTS system protein IID [Escherichia coli O157:H7 EDL93... gi\|49176154, gi\|... - gi\|49176154\|ref\|NP_416333.3\| mannose-specific enzyme IID component of PTS [Escherichia coli str. K-1... gi\|81241355, gi\|... - gi\|82777207\|ref\|YP_403556.1\| mannose-specific PTS system protein IID [Shigella dysenteriae Sd197], g... gi\|13361996, gi\|... - gi\|162139716\|ref\|NP_310556.3\| mannose-specific PTS system protein IID [Escherichia coli O157:H7 str.... gi\|89108658, gi\|... - gi\|89108658\|ref\|AP_002438.1\| mannose-specific enzyme IID component of PTS [Escherichia coli str. K-1... gi\|218558681, gi... - gi\|218558681\|ref\|YP_002391594.1\| mannose-specific PTS system protein IID [Escherichia coli S88], gi\|... gi\|75177248 - gi\|75177248\|ref\|ZP_00697337.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|215265103, gi... - gi\|215487031\|ref\|YP_002329462.1\| mannose-specific PTS system protein IID [Escherichia coli O127:H6 s... gi\|218352113, gi... - gi\|218695381\|ref\|YP_002403048.1\| mannose-specific PTS system protein IID [Escherichia coli 55989], g... gi\|237705769, gi... - gi\|237705769\|ref\|ZP_04536250.1\| mannose-specific PTS system protein IID [Escherichia sp. 3_2_53FAA],... gi\|218427319, gi... - gi\|218689755\|ref\|YP_002397967.1\| mannose-specific PTS system protein IID [Escherichia coli ED1a], gi... gi\|238861728, gi... - gi\|238901033\|ref\|YP_002926829.1\| mannose-specific enzyme IID component of PTS [Escherichia coli BW29... gi\|75215180 - gi\|75215180\|ref\|ZP_00713625.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|91072612, gi\|... - gi\|91211038\|ref\|YP_541024.1\| mannose-specific PTS system protein IID [Escherichia coli UTI89], gi\|91... gi\|218432414, gi... - gi\|218705317\|ref\|YP_002412836.1\| mannose-specific PTS system protein IID [Escherichia coli UMN026], ... gi\|242377539, gi... - gi\|251785266\|ref\|YP_002999570.1\| hypothetical protein B21_01777 [Escherichia coli BL21], gi\|24237753... gi\|74311868, gi\|... - gi\|74311868\|ref\|YP_310287.1\| mannose-specific PTS system protein IID [Shigella sonnei Ss046], gi\|738... gi\|218699612, gi... - gi\|218699612\|ref\|YP_002407241.1\| mannose-specific PTS system protein IID [Escherichia coli IAI39], g... gi\|254161878, gi... - gi\|254161878\|ref\|YP_003044986.1\| mannose-specific enzyme IID component of PTS [Escherichia coli B st... gi\|75190850 - gi\|75190850\|ref\|ZP_00704117.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|254288666, gi... - gi\|254288666\|ref\|YP_003054414.1\| mannose-specific enzyme IID component of PTS [Escherichia coli BL21... gi\|75195886 - gi\|75195886\|ref\|ZP_00705956.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|254793442, gi... - gi\|254793442\|ref\|YP_003078279.1\| mannose-specific enzyme IID component of PTS [Escherichia coli O157... gi\|49176154\|ref\|... - mannose-specific enzyme IID component of PTS [Escherichia coli K12], mannose-specific enzyme IID com...	0.0	[1..293]	[1..284]
gi\|110343528, gi... - gi\|110641936\|ref\|YP_669666.1\| mannose-specific PTS system protein IID [Escherichia coli 536], gi\|110...	0.0	[16..293]	[4..281]
gi\|217318227, gi... - gi\|217328880\|ref\|ZP_03444961.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7... gi\|209157356, gi... - gi\|209395956\|ref\|YP_002270898.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H... gi\|188492002, gi... - gi\|75513684\|ref\|ZP_00736060.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|75255554, gi\|... - gi\|75255554\|ref\|ZP_00727341.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|190907976, gi... - gi\|75241312\|ref\|ZP_00725163.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|189000298, gi... - gi\|189000298\|gb\|EDU69284.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7 str... gi\|168770797, gi... - gi\|189360357\|gb\|EDU78776.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7 str... gi\|170019836, gi... - gi\|170019836\|ref\|YP_001724790.1\| mannose-specific PTS system protein IID [Escherichia coli ATCC 8739... gi\|189372035, gi... - gi\|189372035\|gb\|EDU90451.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7 str... gi\|187430856, gi... - gi\|187733864\|ref\|YP_001880616.1\| PTS system, mannose-specific IID component [Shigella boydii CDC 308... gi\|157066965, gi... - gi\|157161285\|ref\|YP_001458603.1\| mannose-specific PTS system protein IID [Escherichia coli HS], gi\|1... gi\|170517757, gi... - gi\|170680039\|ref\|YP_001743427.1\| PTS system, mannose-specific IID component [Escherichia coli SMS-3-... gi\|157080956, gi... - gi\|157158926\|ref\|YP_001463120.1\| mannose-specific PTS system protein IID [Escherichia coli E24377A],... gi\|208731254, gi... - gi\|208816911\|ref\|ZP_03258031.1\| PTS system, mannose-specific IID component [Escherichia coli O157:H7... gi\|38704019 - gi\|38704019\|ref\|NP_310556.2\| mannose-specific PTS enzyme IID [Escherichia coli O157:H7] EG10569 - mannose-specific enzyme IID component of PTS / Mannose permease, EIID component; phosphotransferase ... gi\|192955390, gi... - gi\|193071295\|ref\|ZP_03052214.1\| PTS system, mannose-specific IID component [Escherichia coli E110019... gi\|124530986, gi... - gi\|124530986\|ref\|ZP_01701442.1\| PTS system, mannose/fructose/sorbose family, IID subunit [Escherichi... gi\|227885755, gi... - gi\|227885755\|ref\|ZP_04003560.1\| mannose-specific PTS system protein IID [Escherichia coli 83972], gi... gi\|253773227, gi... - gi\|253773227\|ref\|YP_003036058.1\| PTS system, mannose/fructose/sorbose family, IID subunit [Escherich... gi\|38704019 - gi\|38704019\|ref\|NP_310556.2\| mannose-specific PTS enzyme IID [Escherichia coli O157:H7 str. Sakai] EG10569 - mannose-specific enzyme IID component of PTS / Mannose permease, EIID component; phosphotransferase ... sp\|P69805\|PTND_ECOLI - Mannose permease IID component OS=Escherichia coli (strain K12) GN=manZ PE=1 SV=2	0.0	[16..293]	[4..281]
gi\|24112793, gi\|... - gi\|24112793\|ref\|NP_707303.1\| mannose-specific PTS system protein IID [Shigella flexneri 2a str. 301]... gi\|30062927, gi\|... - gi\|30062927\|ref\|NP_837098.1\| mannose-specific PTS system protein IID [Shigella flexneri 2a str. 2457... gi\|218361159, gi... - gi\|218554391\|ref\|YP_002387304.1\| mannose-specific PTS system protein IID [Escherichia coli IAI1], gi... gi\|81245152, gi\|... - gi\|82543741\|ref\|YP_407688.1\| mannose-specific PTS system protein IID [Shigella boydii Sb227], gi\|812...	0.0	[1..293]	[1..284]
gi\|145210350, gi... - gi\|145598654\|ref\|YP_001162730.1\| mannose-specific PTS system protein IID [Yersinia pestis Pestoides ... gi\|108812528, gi... - gi\|108812528\|ref\|YP_648295.1\| PTS system, mannose-specific IID component [Yersinia pestis Nepal516],... gi\|153950357, gi... - gi\|77628832\|ref\|ZP_00791418.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|108807124, gi... - gi\|108807124\|ref\|YP_651040.1\| PTS system, mannose-specific IID component [Yersinia pestis Antiqua], ... gi\|165990190, gi... - gi\|166010846\|ref\|ZP_02231744.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia... gi\|89104611, gi\|... - gi\|89104611\|ref\|ZP_01177150.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|170024691, gi... - gi\|170024691\|ref\|YP_001721196.1\| mannose-specific PTS system protein IID [Yersinia pseudotuberculosi... gi\|186895067, gi... - gi\|186895067\|ref\|YP_001872179.1\| mannose-specific PTS system protein IID [Yersinia pseudotuberculosi... gi\|167420317, gi... - gi\|167420317\|ref\|ZP_02312070.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia... gi\|167425887, gi... - gi\|167425887\|ref\|ZP_02317640.1\| PTS system, mannose/fructose/sorbose family, IID component [Yersinia...	0.0	[21..295]	[18..292]
gi\|170121039, gi... - gi\|170770082\|ref\|ZP_02904535.1\| PTS system, mannose-specific IID component [Escherichia albertii TW0... gi\|110614936, gi... - gi\|110805388\|ref\|YP_688908.1\| mannose-specific PTS system protein IID [Shigella flexneri 5 str. 8401... gi\|194416811, gi... - gi\|194434923\|ref\|ZP_03067167.1\| PTS system, mannose-specific IID component [Shigella dysenteriae 101... gi\|209919184, gi... - gi\|209919184\|ref\|YP_002293268.1\| mannose-specific PTS system protein IID [Escherichia coli SE11], gi...	0.0	[16..293]	[4..281]
gi\|77972314 - gi\|77972314\|ref\|ZP_00827884.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	0.0	[21..293]	[13..285]
gi\|77980060, gi\|... - gi\|77980060\|ref\|ZP_00835475.1\| COG3716: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	0.0	[14..295]	[1..282]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREMVDTTTV DTTTVTKTTT GEKKLTASDI RGVFLRSNLF QGSWNFERMQ ALGFCFSMVP  60
   61 AIRRLYPENS EERKQAIKRH LEFFNTQPFV AAPILGVTLA MEEQRANGAE IDDAAINGIK 120
  121 VGLMGPLAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.685	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.676	N/A	N/A	a.1.1	Globin-like
View	Download	0.637	N/A	N/A	a.118.8	TPR-like
View	Download	0.633	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.627	N/A	N/A	a.185.1	Gametocyte protein Pfg27

Predicted Domain #2

Region A:
Residues: [130-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGDPIFWGTV RPVFAALGAG IAMSGSLLGP LLFFVLFNVV RLLTRYYGVA YGYKKGVNIV  60
   61 NDMGGGFLQK LTEGASILGL FVMGALVNKW THVNIPVVVS RITNPAGETT VTTVQTILDQ 120
  121 LMPGLVPLLL TFGCMWLLRR KVNALWIIMG FFAIGIFGYW IGFLAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.554	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.542	N/A	N/A	d.74.3	RBP11-like subunits of RNA polymerase
View	Download	0.524	N/A	N/A	a.24.4	Hemerythrin
View	Download	0.517	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.511	N/A	N/A	d.56.1	GroEL-intermediate domain like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits