YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25319825
Organism:	Yersinia pestis
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25319825.

Description	E-value	Query Range	Subject Range
gi\|78390589, gi\|... - gi\|78492161\|ref\|ZP_00844398.1\| Transglycosylase-associated protein [Rhodopseudomonas palustris BisB1...	2.0E-15	[26..105]	[46..124]
gi\|67544650, gi\|... - gi\|67544650\|ref\|ZP_00422577.1\| Transglycosylase-associated protein [Burkholderia vietnamiensis G4], ...	2.0E-15	[25..106]	[42..121]
gi\|76809430, gi\|... - gi\|76809430\|ref\|YP_334412.1\| hypothetical protein BURPS1710b_3035 [Burkholderia pseudomallei 1710b],...	1.0E-14	[27..106]	[244..321]
gi\|111280999, gi... - gi\|111618532\|ref\|ZP_01405554.1\| membrane protein-like [Acidovorax avenae subsp. citrulli AAC00-1], g...	5.0E-14	[42..107]	[119..182]
gi\|89102856 - gi\|89102856\|ref\|ZP_01175462.1\| COG2261: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|77636457 - gi\|77636457\|ref\|ZP_00798531.1\| COG2261: Predicted membrane protein [Yersinia pestis Angola] gi\|77632181, gi\|... - gi\|77632181\|ref\|ZP_00794767.1\| COG2261: Predicted membrane protein [Yersinia pseudotuberculosis IP 3...	5.0E-14	[22..107]	[1..86]
gi\|77958535 - gi\|77958535\|ref\|ZP_00822567.1\| COG2261: Predicted membrane protein [Yersinia bercovieri ATCC 43970]	7.0E-14	[22..107]	[1..86]
gi\|238717227, gi... - gi\|77961400\|ref\|ZP_00825238.1\| COG2261: Predicted membrane protein [Yersinia mollaretii ATCC 43969],...	1.0E-13	[22..107]	[1..86]
gi\|114326808, gi... - gi\|114326808\|ref\|YP_743965.1\| integral membrane protein [Granulibacter bethesdensis CGDNIH1], gi\|114...	1.0E-13	[24..105]	[17..96]
gi\|110805195, gi... - gi\|110805195\|ref\|YP_688715.1\| hypothetical protein SFV_1203 [Shigella flexneri 5 str. 8401], gi\|1106...	7.0E-13	[26..106]	[12..93]
gi\|77973906, gi\|... - gi\|77973906\|ref\|ZP_00829450.1\| COG2261: Predicted membrane protein [Yersinia frederiksenii ATCC 3364...	1.0E-12	[26..107]	[1..82]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQPIWWFRT YGVSGTVIIN FMEALMGILS WIIFGLIAGI LAKWIMPGED GGGFIMTIIL  60
   61 GIIGALVGGY ISTFFGMGRV DGFNLGSFVV AVIGSLVVLF IYRKLRS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.981
Match:	2oarA
Description:	No description for 2oarA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits