YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45442579, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45442579, gi|....

Description	E-value	Query Range	Subject Range
gi\|77972706, gi\|... - gi\|77972706\|ref\|ZP_00828265.1\| COG1196: Chromosome segregation ATPases [Yersinia frederiksenii ATCC ...	2.0E-57	[1..129]	[1..129]
gi\|238784875, gi... - gi\|77957685\|ref\|ZP_00821734.1\| COG1196: Chromosome segregation ATPases [Yersinia bercovieri ATCC 439... gi\|77963179 - gi\|77963179\|ref\|ZP_00826991.1\| COG1196: Chromosome segregation ATPases [Yersinia mollaretii ATCC 439...	6.0E-57	[1..129]	[1..129]
gi\|77977752, gi\|... - gi\|77977752\|ref\|ZP_00833193.1\| COG1196: Chromosome segregation ATPases [Yersinia intermedia ATCC 299...	2.0E-56	[1..129]	[1..129]
YAEH_SHIFL - UPF0325 protein YaeH OS=Shigella flexneri GN=yaeH PE=3 SV=1 YAEH_ECO57 - UPF0325 protein YaeH OS=Escherichia coli O157:H7 GN=yaeH PE=3 SV=1 YAEH_ECOLI - UPF0325 protein yaeH - Escherichia coli YAEH_ECOL6 - UPF0325 protein yaeH OS=Escherichia coli O6 GN=yaeH PE=3 SV=1 YAEH_ECOK1 - UPF0325 protein YaeH OS=Escherichia coli O1:K1 / APEC GN=yaeH PE=3 SV=1 EG12336 - UPF0325 family protein / Function unknown, UPF0325 family gi\|24050366, gi\|... - gi\|24111600\|ref\|NP_706110.1\| hypothetical protein SF0155 [Shigella flexneri 2a str. 301], gi\|2405036... YAEH_ECOL6 - UPF0325 protein YaeH OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yaeH PE=3 SV=... gi\|30039964, gi\|... - gi\|30061722\|ref\|NP_835893.1\| hypothetical protein S0158 [Shigella flexneri 2a str. 2457T], gi\|300399... EG12336 - UPF0325 family protein / Function unknown, UPF0325 family gi\|15799847, gi\|... - gi\|15799847\|ref\|NP_285859.1\| hypothetical protein Z0175 [Escherichia coli O157:H7 EDL933], gi\|125128... sp\|B7UIL0\|YAEH_ECO27 - UPF0325 protein yaeH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yaeH PE=3 SV=1 YAEH_ECODH - UPF0325 protein YaeH OS=Escherichia coli (strain K12 / DH10B) GN=yaeH PE=3 SV=1 YAEH_ECOSM - UPF0325 protein YaeH OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yaeH PE=3 SV=1 gi\|170768412, gi... - gi\|170768412\|ref\|ZP_02902865.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|195938154 - gi\|195938154\|ref\|ZP_03083536.1\| hypothetical protein EscherichcoliO157_17266 [Escherichia coli O157:... gi\|208806468, gi... - gi\|208806468\|ref\|ZP_03248805.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208814086, gi... - gi\|208814086\|ref\|ZP_03255415.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208741054, gi... - gi\|208820931\|ref\|ZP_03261251.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... YAEH_ECO5E - UPF0325 protein YaeH OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yaeH PE=3 SV=1 gi\|188014563, gi... - gi\|188014563\|gb\|EDU52685.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168755777, gi... - gi\|189357040\|gb\|EDU75459.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168764329, gi... - gi\|189365651\|gb\|EDU84067.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189360730, gi... - gi\|189360730\|gb\|EDU79149.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168777001, gi... - gi\|187767686\|gb\|EDU31530.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189000454, gi... - gi\|189000454\|gb\|EDU69440.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189371121, gi... - gi\|189371121\|gb\|EDU89537.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168802319, gi... - gi\|189375676\|gb\|EDU94092.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|254590698, gi... - gi\|254791298\|ref\|YP_003076135.1\| hypothetical protein ECSP_0164 [Escherichia coli O157:H7 str. TW143... gi\|188488507, gi... - gi\|75512176\|ref\|ZP_00734748.1\| COG1196: Chromosome segregation ATPases [Escherichia coli 53638], gi\|... YAEH_ECOL5 - UPF0325 protein YaeH OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yaeH PE=3 SV=1 YAEH_ECOLU - UPF0325 protein YaeH OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yaeH PE=3 SV=1 gi\|253972184, gi... - gi\|254160283\|ref\|YP_003043391.1\| hypothetical protein ECB_00162 [Escherichia coli B str. REL606], gi... YAEH_SHISS - UPF0325 protein YaeH OS=Shigella sonnei (strain Ss046) GN=yaeH PE=3 SV=1 YAEH_SHIF8 - UPF0325 protein YaeH OS=Shigella flexneri serotype 5b (strain 8401) GN=yaeH PE=3 SV=1 gi\|254037583, gi... - gi\|254037583\|ref\|ZP_04871660.1\| yaeH [Escherichia sp. 1_1_43], gi\|226840689\|gb\|EEH72691.1\| yaeH [Esc... gi\|75240246, gi\|... - gi\|75240246\|ref\|ZP_00724193.1\| COG1196: Chromosome segregation ATPases [Escherichia coli F11], gi\|19... gi\|253325853, gi... - gi\|254287086\|ref\|YP_003052834.1\| hypothetical protein ECD_00162 [Escherichia coli BL21(DE3)], gi\|253... gi\|75258846, gi\|... - gi\|75258846\|ref\|ZP_00730236.1\| COG1196: Chromosome segregation ATPases [Escherichia coli E22], gi\|19... gi\|251783723, gi... - gi\|251783723\|ref\|YP_002998027.1\| hypothetical protein B21_00161 [Escherichia coli BL21], gi\|24237599... YAEH_ECOBW - UPF0325 protein YaeH OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yaeH PE=3 SV=1 gi\|21239019, gi\|... - gi\|89107044\|ref\|AP_000824.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|212... gi\|226902236, gi... - gi\|237704324\|ref\|ZP_04534805.1\| yaeH [Escherichia sp. 3_2_53FAA], gi\|226902236\|gb\|EEH88495.1\| yaeH [... YAEH_SHIDS - UPF0325 protein YaeH OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yaeH PE=3 SV=1 YAEH_ECOUT - UPF0325 protein YaeH OS=Escherichia coli (strain UTI89 / UPEC) GN=yaeH PE=3 SV=1 gi\|227884922, gi... - gi\|227884922\|ref\|ZP_04002727.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783806... YAEH_SHIBS - UPF0325 protein YaeH OS=Shigella boydii serotype 4 (strain Sb227) GN=yaeH PE=3 SV=1 gi\|13359623, gi\|... - gi\|15829421\|ref\|NP_308194.1\| hypothetical protein ECs0167 [Escherichia coli O157:H7 str. Sakai], gi\|... YAEH_SHIB3 - UPF0325 protein YaeH OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yaeH PE=3 SV=1 YAEH_ECOSE - UPF0325 protein YaeH OS=Escherichia coli (strain SE11) GN=yaeH PE=3 SV=1 YAEH_ECO24 - UPF0325 protein YaeH OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yaeH PE=3 SV=1 YAEH_ECO27 - UPF0325 protein YaeH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yaeH PE=3 SV=1 gi\|194418306, gi... - gi\|83569746\|ref\|ZP_00921196.1\| COG1196: Chromosome segregation ATPases [Shigella dysenteriae 1012], ... gi\|217324181, gi... - gi\|217324181\|ref\|ZP_03440265.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|194439102, gi... - gi\|83585480\|ref\|ZP_00924125.1\| COG1196: Chromosome segregation ATPases [Escherichia coli 101-1], gi\|... YAEH_ECO8A - UPF0325 protein YaeH OS=Escherichia coli O8 (strain IAI1) GN=yaeH PE=3 SV=1 gi\|75230474, gi\|... - gi\|75230474\|ref\|ZP_00716955.1\| COG1196: Chromosome segregation ATPases [Escherichia coli B7A], gi\|19... YAEH_ECO45 - UPF0325 protein YaeH OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yaeH PE=3 SV=1 gi\|75238868, gi\|... - gi\|75238868\|ref\|ZP_00722850.1\| COG1196: Chromosome segregation ATPases [Escherichia coli E110019], g... YAEH_ECO81 - UPF0325 protein YaeH OS=Escherichia coli O81 (strain ED1a) GN=yaeH PE=3 SV=1 YAEH_ECOHS - UPF0325 protein YaeH OS=Escherichia coli O9:H4 (strain HS) GN=yaeH PE=3 SV=1 YAEH_ECO55 - UPF0325 protein YaeH OS=Escherichia coli (strain 55989 / EAEC) GN=yaeH PE=3 SV=1 gi\|75210488, gi\|... - gi\|75210488\|ref\|ZP_00710639.1\| COG1196: Chromosome segregation ATPases [Escherichia coli B171], gi\|1... YAEH_ECO7I - UPF0325 protein YaeH OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yaeH PE=3 SV=1	5.0E-54	[1..126]	[1..126]
Y668_PHOLL - UPF0325 protein plu0668 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ... Y668_PHOLL - UPF0325 protein plu0668 OS=Photorhabdus luminescens subsp. laumondii GN=plu0668 PE=3 SV=1	2.0E-53	[1..126]	[1..126]
YAEH_SALPA - UPF0325 protein YaeH OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yaeH PE=3 SV=1 YAEH_SALCH - UPF0325 protein YaeH OS=Salmonella choleraesuis (strain SC-B67) GN=yaeH PE=3 SV=1 gi\|214000845 - gi\|214000845\|ref\|ZP_03411580.1\| hypothetical protein Salmonellentericaenterica_09811 [Salmonella ent... gi\|213647545 - gi\|213647545\|ref\|ZP_03377598.1\| hypothetical protein SentesTy_09807 [Salmonella enterica subsp. ente... gi\|213609530 - gi\|213609530\|ref\|ZP_03369356.1\| hypothetical protein SentesTyp_02918 [Salmonella enterica subsp. ent... gi\|213975349 - gi\|213975349\|ref\|ZP_03402608.1\| hypothetical protein Salmonellaentericaenterica_12618 [Salmonella en... gi\|213852251 - gi\|213852251\|ref\|ZP_03381783.1\| hypothetical protein SentesT_04837 [Salmonella enterica subsp. enter... YAEH_SALEP - UPF0325 protein YaeH OS=Salmonella enteritidis PT4 (strain P125109) GN=yaeH PE=3 SV=1 YAEH_SALG2 - UPF0325 protein YaeH OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yaeH PE=3 SV=1 YAEH_SALTY - UPF0325 protein yaeH OS=Salmonella typhimurium GN=yaeH PE=3 SV=1 YAEH_SALPB - UPF0325 protein yaeH OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yaeH PE=3 SV=1 gi\|213582935 - gi\|213582935\|ref\|ZP_03364761.1\| hypothetical protein SentesTyph_17678 [Salmonella enterica subsp. en... YAEH_SALCH - UPF0325 protein yaeH OS=Salmonella choleraesuis GN=yaeH PE=3 SV=1 gi\|213425937 - gi\|213425937\|ref\|ZP_03358687.1\| hypothetical protein SentesTyphi_09984 [Salmonella enterica subsp. e... YAEH_SALTY - UPF0325 protein yaeH OS=Salmonella typhimurium GN=yaeH PE=3 SV=1 YAEH_SALTI - UPF0325 protein yaeH OS=Salmonella typhi GN=yaeH PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yaeH] [protein=hypothetical protein] [protein_id=YP_005235882.1] [location=complement(248022..... YAEH_SALPB - UPF0325 protein YaeH OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yaeH PE=3 SV=1 gi\|16759202 - gi\|16759202\|ref\|NP_454819.1\| hypothetical protein STY0233 [Salmonella enterica subsp. enterica serov... YAEH_SALTY - UPF0325 protein YaeH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yaeH PE=3 SV... gi\|205331459, gi... - gi\|205331459\|gb\|EDZ18223.1\| protein YaeH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|29136376, gi\|... - gi\|29140752\|ref\|NP_804094.1\| hypothetical protein t0212 [Salmonella enterica subsp. enterica serovar... gi\|167550584, gi... - gi\|205324401\|gb\|EDZ12240.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Saintpaul str.... YAEH_SALCH - UPF0325 protein yaeH OS=Salmonella choleraesuis GN=yaeH PE=3 SV=1 YAEH_SALPA - UPF0325 protein yaeH OS=Salmonella paratyphi A GN=yaeH PE=3 SV=1 YAEH_SALDC - UPF0325 protein YaeH OS=Salmonella dublin (strain CT_02021853) GN=yaeH PE=3 SV=1 YAEH_SALPK - UPF0325 protein YaeH OS=Salmonella paratyphi A (strain AKU_12601) GN=yaeH PE=3 SV=1 gi\|204927233, gi... - gi\|204927233\|ref\|ZP_03218435.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Javiana st... gi\|199604908, gi... - gi\|200387810\|ref\|ZP_03214422.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Virchow st... YAEH_SALSV - UPF0325 protein YaeH OS=Salmonella schwarzengrund (strain CVM19633) GN=yaeH PE=3 SV=1 gi\|194457314, gi... - gi\|194470950\|ref\|ZP_03076934.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|197262542, gi... - gi\|197262542\|ref\|ZP_03162616.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|238911277 - gi\|238911277\|ref\|ZP_04655114.1\| hypothetical protein SentesTe_09095 [Salmonella enterica subsp. ente... YAEH_SALA4 - UPF0325 protein YaeH OS=Salmonella agona (strain SL483) GN=yaeH PE=3 SV=1 gi\|168820783, gi... - gi\|205342409\|gb\|EDZ29173.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|195632708, gi... - gi\|195632708\|gb\|EDX51162.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Newport str. S... YAEH_SALHS - UPF0325 protein YaeH OS=Salmonella heidelberg (strain SL476) GN=yaeH PE=3 SV=1 YAEH_SALNS - UPF0325 protein YaeH OS=Salmonella newport (strain SL254) GN=yaeH PE=3 SV=1 gi\|197291960, gi... - gi\|197291960\|gb\|EDY31310.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Schwarzengrund... YAEH_SALTI - UPF0325 protein YaeH OS=Salmonella typhi GN=yaeH PE=3 SV=1 gi\|168230517, gi... - gi\|205335072\|gb\|EDZ21836.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|205347450, gi... - gi\|205347450\|gb\|EDZ34081.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|205336159, gi... - gi\|205336159\|gb\|EDZ22923.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Heidelberg str...	3.0E-53	[1..126]	[1..126]
Y1856_VIBVU, YI5... - (Q8DBG4) Hypothetical UPF0325 protein VV11856, UPF0325 protein VV1_1856 OS=Vibrio vulnificus GN=VV1_... Y2560_VIBVY - UPF0325 protein VV2560 OS=Vibrio vulnificus (strain YJ016) GN=VV2560 PE=3 SV=1 Y1856_VIBVU - UPF0325 protein VV1_1856 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1856 PE=3 SV=1	5.0E-53	[1..125]	[1..126]
Y1027_PECAS - UPF0325 protein ECA1027 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA1027 ... Y1027_ERWCT - UPF0325 protein ECA1027 OS=Erwinia carotovora subsp. atroseptica GN=ECA1027 PE=3 SV=1	7.0E-53	[1..129]	[1..129]
gi\|229519277, gi... - gi\|229519277\|ref\|ZP_04408720.1\| chromosome segregation ATPase [Vibrio cholerae RC9], gi\|229343966\|gb... gi\|229513905, gi... - gi\|229513905\|ref\|ZP_04403367.1\| chromosome segregation ATPase [Vibrio cholerae TMA 21], gi\|229349086... gi\|229369822, gi... - gi\|229607167\|ref\|YP_002877815.1\| chromosome segregation ATPase [Vibrio cholerae MJ-1236], gi\|2293698... gi\|229341134, gi... - gi\|229522209\|ref\|ZP_04411626.1\| chromosome segregation ATPase [Vibrio cholerae TM 11079-80], gi\|2293... gi\|121586181, gi... - gi\|121586181\|ref\|ZP_01675972.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215495... gi\|153217365, gi... - gi\|153217365\|ref\|ZP_01951116.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124113611\|... gi\|121628502, gi... - gi\|121729751\|ref\|ZP_01682190.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121628502\|g... gi\|124121449, gi... - gi\|153803006\|ref\|ZP_01957592.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121449... gi\|153221404, gi... - gi\|153221404\|ref\|ZP_01952382.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241197... gi\|126509130, gi... - gi\|153820323\|ref\|ZP_01972990.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|254845098, gi... - gi\|254849393\|ref\|ZP_05238743.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254845098\|... gi\|9656826, gi\|1... - gi\|9656826\|gb\|AAF95408.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11280806 - gi\|11280806\|pir\|\|G82097 conserved hypothetical protein VC2264 [imported] - Vibrio cholerae (strain N... gi\|126518835, gi... - gi\|229512142\|ref\|ZP_04401621.1\| chromosome segregation ATPase [Vibrio cholerae B33], gi\|229352107\|gb... gi\|194535836, gi... - gi\|254222921\|ref\|ZP_04916785.1\| conserved hypothetical protein [Vibrio cholerae RC385], gi\|194535836... gi\|153828223, gi... - gi\|153828223\|ref\|ZP_01980890.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887631... gi\|147675190, gi... - gi\|227118710\|ref\|YP_002820606.1\| hypothetical protein VC395_2380 [Vibrio cholerae O395], gi\|22701416... gi\|229507663, gi... - gi\|229507663\|ref\|ZP_04397168.1\| chromosome segregation ATPase [Vibrio cholerae BX 330286], gi\|229355... gi\|227010276, gi... - gi\|227082388\|ref\|YP_002810939.1\| hypothetical protein VCM66_2187 [Vibrio cholerae M66-2], gi\|2270102...	1.0E-52	[1..125]	[11..136]
Y2321_VIBPA - UPF0325 protein VP2321 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP2321 PE=... Y2321_VIBPA, YN2... - (Q87MD5) Hypothetical UPF0325 protein VP2321, UPF0325 protein VP2321 OS=Vibrio parahaemolyticus GN=V... gi\|153840387, gi... - gi\|153840387\|ref\|ZP_01993054.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	1.0E-52	[1..125]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDNLKSLGI TQPEDVDRYS LRQEANNDIL KIYFRKDKGE FFAKSVKFKY PRQRKTVVSD  60
   61 NASHGYKEIN EINPNLRYVI DELDQLCKRD QIEVDLKRKI LDDLRHLESV VTNKIAEIEA 120
  121 DLEKLTNGR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	0.160458061290517	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: