YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51590765, gi\|...
Organism:	Yersinia pseudotuberculosis IP 32953
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51590765, gi|....

Description	E-value	Query Range	Subject Range
gi\|62129189, gi\|... - gi\|62181556\|ref\|YP_217973.1\| hypothetical protein SC2986 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=ygfX] [protein=putative inner membrane protein] [protein_id=YP_005239181.1] [location=compleme... gi\|206710112, gi... - gi\|207858309\|ref\|YP_002244960.1\| hypothetical protein SEN2889 [Salmonella enterica subsp. enterica s... gi\|224584835, gi... - gi\|224584835\|ref\|YP_002638633.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|197939731, gi... - gi\|198245215\|ref\|YP_002217023.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205273751, gi... - gi\|205353970\|ref\|YP_002227771.1\| hypothetical protein SG2941 [Salmonella enterica subsp. enterica se... gi\|238909845 - gi\|238909845\|ref\|ZP_04653682.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|197249800, gi... - gi\|197249800\|ref\|YP_002147958.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|197262800, gi... - gi\|197262800\|ref\|ZP_03162874.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|194472287, gi... - gi\|194472287\|ref\|ZP_03078271.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|194712481, gi... - gi\|194736979\|ref\|YP_002115995.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|168463786, gi... - gi\|195633635\|gb\|EDX52049.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|194446572, gi... - gi\|194446572\|ref\|YP_002042297.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|168231151, gi... - gi\|205334585\|gb\|EDZ21349.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|205349207, gi... - gi\|205349207\|gb\|EDZ35838.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|205324745, gi... - gi\|205324745\|gb\|EDZ12584.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|16766347, gi\|... - gi\|16766347\|ref\|NP_461962.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164215... gi\|205327967, gi... - gi\|205327967\|gb\|EDZ14731.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|161365357, gi... - gi\|161615993\|ref\|YP_001589958.1\| hypothetical protein SPAB_03793 [Salmonella enterica subsp. enteric...	5.0E-48	[1..130]	[1..128]
gi\|75212490, gi\|... - gi\|75212490\|ref\|ZP_00712514.1\| hypothetical protein EcolB_01000577 [Escherichia coli B171], gi\|19442...	2.0E-47	[1..130]	[1..128]
gi\|157157244, gi... - gi\|75187612\|ref\|ZP_00700879.1\| hypothetical protein EcolE_01000844 [Escherichia coli E24377A], gi\|15... EG13074 - toxin of CptAB toxin-antitoxin pair / Toxin of CptAB toxin-antitoxin pair gi\|157162356, gi... - gi\|75196848\|ref\|ZP_00706918.1\| hypothetical protein EcolH_01002660 [Escherichia coli HS], gi\|1571623... gi\|83587708 - gi\|83587708\|ref\|ZP_00926335.1\| hypothetical protein Ecol1_01001241 [Escherichia coli 101-1] gi\|187732943, gi... - gi\|75178789\|ref\|ZP_00698825.1\| hypothetical protein SboyB_01001178 [Shigella boydii BS512], gi\|18773... gi\|74313454, gi\|... - gi\|74313454\|ref\|YP_311873.1\| hypothetical protein SSON_3049 [Shigella sonnei Ss046], gi\|73856931\|gb\|... gi\|82545481, gi\|... - gi\|82545481\|ref\|YP_409428.1\| hypothetical protein SBO_3096 [Shigella boydii Sb227], gi\|81246892\|gb\|A... gi\|75234624, gi\|... - gi\|75234624\|ref\|ZP_00718955.1\| hypothetical protein EcolE1_01003516 [Escherichia coli E110019], gi\|1... gi\|75515321, gi\|... - gi\|75515321\|ref\|ZP_00737505.1\| hypothetical protein Ecol5_01000902 [Escherichia coli 53638], gi\|1884... gi\|238902021, gi... - gi\|238902021\|ref\|YP_002927817.1\| hypothetical protein BWG_2621 [Escherichia coli BW2952], gi\|2388629... EG13074 - toxin of CptAB toxin-antitoxin pair / Toxin of CptAB toxin-antitoxin pair gi\|124502302, gi... - gi\|124526198\|ref\|ZP_01698203.1\| protein of unknown function DUF1434 [Escherichia coli B], gi\|1245023... gi\|85675708, gi\|... - gi\|89109675\|ref\|AP_003455.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|170018858, gi... - gi\|170018858\|ref\|YP_001723812.1\| hypothetical protein EcolC_0813 [Escherichia coli ATCC 8739], gi\|16... YGFX_ECOLI - Hypothetical protein ygfX - Escherichia coli gi\|218362212, gi... - gi\|218555444\|ref\|YP_002388357.1\| hypothetical protein ECIAI1_3015 [Escherichia coli IAI1], gi\|218362... gi\|169890292, gi... - gi\|170082457\|ref\|YP_001731777.1\| hypothetical protein ECDH10B_3070 [Escherichia coli str. K-12 subst...	7.0E-47	[1..130]	[1..128]
gi\|218353223, gi... - gi\|218696491\|ref\|YP_002404158.1\| hypothetical protein EC55989_3182 [Escherichia coli 55989], gi\|2183... gi\|209913609, gi... - gi\|209920350\|ref\|YP_002294434.1\| hypothetical protein ECSE_3159 [Escherichia coli SE11], gi\|20991360... gi\|192930823, gi... - gi\|75258495\|ref\|ZP_00729917.1\| hypothetical protein EcolE2_01001725 [Escherichia coli E22], gi\|19306... gi\|190903991, gi... - gi\|75230869\|ref\|ZP_00717327.1\| hypothetical protein EcolB7_01001011 [Escherichia coli B7A], gi\|19116...	1.0E-46	[1..130]	[1..128]
gi\|26109719, gi\|... - gi\|26249311\|ref\|NP_755351.1\| hypothetical protein c3476 [Escherichia coli CFT073], gi\|26109719\|gb\|AA... gi\|209760560, gi... - pir\|\|D85945 hypothetical protein Z4234 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12517424, gi\|... - gi\|15803432\|ref\|NP_289465.1\| hypothetical protein Z4234 [Escherichia coli O157:H7 EDL933], gi\|125174... gi\|13363240, gi\|... - gi\|15833022\|ref\|NP_311795.1\| hypothetical protein ECs3768 [Escherichia coli O157:H7], gi\|13363240\|db... gi\|218701605, gi... - gi\|218701605\|ref\|YP_002409234.1\| hypothetical protein ECIAI39_3312 [Escherichia coli IAI39], gi\|2183... gi\|215488196, gi... - gi\|215488196\|ref\|YP_002330627.1\| hypothetical protein E2348C_3149 [Escherichia coli O127:H6 str. E23... gi\|217327745, gi... - gi\|217327745\|ref\|ZP_03443828.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218366658, gi... - gi\|218559889\|ref\|YP_002392802.1\| hypothetical protein ECS88_3176 [Escherichia coli S88], gi\|21836665... gi\|218428585, gi... - gi\|218691021\|ref\|YP_002399233.1\| hypothetical protein ECED1_3355 [Escherichia coli ED1a], gi\|2184285... gi\|170521100, gi... - gi\|170683382\|ref\|YP_001745049.1\| hypothetical protein EcSMS35_3029 [Escherichia coli SMS-3-5], gi\|17... gi\|195936514 - gi\|195936514\|ref\|ZP_03081896.1\| hypothetical protein EscherichcoliO157_08632 [Escherichia coli O157:... gi\|91212274, gi\|... - gi\|91212274\|ref\|YP_542260.1\| hypothetical protein UTI89_C3281 [Escherichia coli UTI89], gi\|91073848\|... gi\|208814232, gi... - gi\|208814232\|ref\|ZP_03255561.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|13363240, gi\|... - gi\|15833022\|ref\|NP_311795.1\| hypothetical protein ECs3768 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208740940, gi... - gi\|208820817\|ref\|ZP_03261137.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|168766889, gi... - gi\|189363733\|gb\|EDU82152.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168778909, gi... - gi\|189003222\|gb\|EDU72208.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|227834714, gi... - gi\|227888445\|ref\|ZP_04006250.1\| inner membrane protein [Escherichia coli 83972], gi\|227834714\|gb\|EEJ... gi\|189374033, gi... - gi\|189374033\|gb\|EDU92449.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168800029, gi... - gi\|189377646\|gb\|EDU96062.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168747625, gi... - gi\|188017967\|gb\|EDU56089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168753834, gi... - gi\|189358379\|gb\|EDU76798.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254037940, gi... - gi\|254037940\|ref\|ZP_04871998.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683956... gi\|168760024, gi... - gi\|189369310\|gb\|EDU87726.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|254794846, gi... - gi\|254794846\|ref\|YP_003079683.1\| hypothetical protein ECSP_3864 [Escherichia coli O157:H7 str. TW143...	1.0E-46	[1..130]	[1..128]
gi\|110616347, gi... - gi\|110806799\|ref\|YP_690319.1\| hypothetical protein SFV_2944 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114150, gi\|... - gi\|24114150\|ref\|NP_708660.1\| hypothetical protein SF2882 [Shigella flexneri 2a str. 301], gi\|2405329... gi\|30042465, gi\|... - gi\|30064208\|ref\|NP_838379.1\| hypothetical protein S3081 [Shigella flexneri 2a str. 2457T], gi\|300424...	3.0E-46	[1..130]	[1..128]
gi\|75239240, gi\|... - gi\|75239240\|ref\|ZP_00723213.1\| hypothetical protein EcolF_01003145 [Escherichia coli F11], gi\|191173... gi\|110643044, gi... - gi\|110643044\|ref\|YP_670774.1\| hypothetical protein ECP_2889 [Escherichia coli 536], gi\|110344636\|gb\|...	4.0E-46	[1..130]	[1..128]
gi\|81242486, gi\|... - gi\|82778338\|ref\|YP_404687.1\| hypothetical protein SDY_3186 [Shigella dysenteriae Sd197], gi\|81242486...	5.0E-46	[1..130]	[1..128]
gi\|36786862, gi\|... - gi\|37527427\|ref\|NP_930771.1\| hypothetical protein plu3554 [Photorhabdus luminescens subsp. laumondii...	2.0E-45	[1..130]	[1..132]
gi\|89102652 - gi\|89102652\|ref\|ZP_01175270.1\| hypothetical protein Ypesb_01003344 [Yersinia pestis biovar Orientali... gi\|77635824 - gi\|77635824\|ref\|ZP_00797904.1\| hypothetical protein YpesA_01000818 [Yersinia pestis Angola]	5.0E-43	[20..141]	[1..122]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQWRCNLRV SWHTQLFSLL AHGILVILTL VAPWPLGYTA LWLVLLTLVV FECIRSQKRI  60
   61 KSCQGEIRLK PGNLVRWKRH EWTVVKPPWI TRYGVLLHLQ QTGGHATRKR LWLSADSMSE 120
  121 DEWRQLCLLL RHSFESDDGT M

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	123.29243
Match:	PF07254.3
Description:	No description for PF07254.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.684	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.545	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.499	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.497	N/A	N/A	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.479	N/A	N/A	d.198.1	Type III secretory system chaperone

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits