YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115346384, gi...
Organism:	Yersinia pestis CO92
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115346384, gi....

Description	E-value	Query Range	Subject Range
gi\|22127476, gi\|... - gi\|22127476\|ref\|NP_670899.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB [Yersinia pest... gi\|45437528, gi\|... - gi\|45442662\|ref\|NP_994201.1\| exu regulon transcriptional regulator [Yersinia pestis biovar Microtus ...	1.0E-52	[1..264]	[29..292]
gi\|77976510, gi\|... - gi\|77976510\|ref\|ZP_00831995.1\| COG2186: Transcriptional regulators [Yersinia intermedia ATCC 29909],...	7.0E-48	[1..263]	[1..264]
gi\|82778421, gi\|... - gi\|82778421\|ref\|YP_404770.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB [Shigella dyse...	7.0E-47	[1..257]	[6..263]
gi\|170518081, gi... - gi\|170680363\|ref\|YP_001745369.1\| exu regulon transcriptional regulator [Escherichia coli SMS-3-5], g... gi\|110643343, gi... - gi\|110643343\|ref\|YP_671073.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli 536], gi\|...	1.0E-46	[1..257]	[1..258]
gi\|169753579, gi... - gi\|170018651\|ref\|YP_001723605.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli ATCC 8... gi\|194422250, gi... - gi\|83585738\|ref\|ZP_00924379.1\| COG2186: Transcriptional regulators [Escherichia coli 101-1], gi\|1944... gi\|242378643, gi... - gi\|251786370\|ref\|YP_003000674.1\| hypothetical protein B21_02914 [Escherichia coli BL21], gi\|24237864... gi\|253974941, gi... - gi\|254163040\|ref\|YP_003046148.1\| DNA-binding transcriptional repressor [Escherichia coli B str. REL6... gi\|253979097, gi... - gi\|254289790\|ref\|YP_003055538.1\| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)],... gi\|124502096, gi... - gi\|124525992\|ref\|ZP_01697997.1\| GntR domain protein [Escherichia coli B], gi\|124502096\|gb\|EAY49556.1...	1.0E-46	[1..257]	[1..258]
gi\|188016367, gi... - gi\|188016367\|gb\|EDU54489.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC4... gi\|168754070, gi... - gi\|189358468\|gb\|EDU76887.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC4... gi\|189367553, gi... - gi\|189367553\|gb\|EDU85969.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC4... EG12739 - hexuronate regulon transcriptional repressor; autorepressor / Hexuronate regulon transcriptional rep... gi\|189361499, gi... - gi\|189361499\|gb\|EDU79918.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC4... gi\|168773244, gi... - gi\|187770985\|gb\|EDU34829.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC4... gi\|189001137, gi... - gi\|189001137\|gb\|EDU70123.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC4... gi\|189373960, gi... - gi\|189373960\|gb\|EDU92376.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC8... gi\|168797690, gi... - gi\|189379734\|gb\|EDU98150.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str. EC5... gi\|110806979, gi... - gi\|110806979\|ref\|YP_690499.1\| DNA-binding transcriptional repressor ExuR [Shigella flexneri 5 str. 8... gi\|161367522 - gi\|161367522\|ref\|NP_289668.2\| DNA-binding transcriptional repressor ExuR [Escherichia coli O157:H7 E... gi\|162139756 - gi\|162139756\|ref\|NP_312003.2\| DNA-binding transcriptional repressor ExuR [Escherichia coli O157:H7 s... gi\|254795045, gi... - gi\|254795045\|ref\|YP_003079882.1\| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str... gi\|217320334, gi... - gi\|217327967\|ref\|ZP_03444050.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str.... gi\|238902204, gi... - gi\|238902204\|ref\|YP_002928000.1\| DNA-binding transcriptional repressor [Escherichia coli BW2952], gi... gi\|218362434, gi... - gi\|218555666\|ref\|YP_002388579.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli IAI1],... gi\|218353534, gi... - gi\|218696802\|ref\|YP_002404469.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli 55989]... gi\|218701869, gi... - gi\|218701869\|ref\|YP_002409498.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli IAI39]... gi\|169890471, gi... - gi\|170082636\|ref\|YP_001731956.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 s... gi\|194433744, gi... - gi\|194433744\|ref\|ZP_03066019.1\| Exu regulon transcriptional regulator [Shigella dysenteriae 1012], g... gi\|195938315 - gi\|195938315\|ref\|ZP_03083697.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli O157:H7... gi\|208805969, gi... - gi\|208805969\|ref\|ZP_03248306.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str.... gi\|208814183, gi... - gi\|208814183\|ref\|ZP_03255512.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str.... gi\|208739179, gi... - gi\|208819056\|ref\|ZP_03259376.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str.... gi\|209159840, gi... - gi\|209398440\|ref\|YP_002272567.1\| Exu regulon transcriptional regulator [Escherichia coli O157:H7 str... EXUR_ECOLI - Exu regulon transcriptional regulator - Escherichia coli gi\|209913829, gi... - gi\|209920570\|ref\|YP_002294654.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli SE11],... EXUR_ECO57 - Exu regulon transcriptional regulator OS=Escherichia coli O157:H7 GN=exuR PE=3 SV=1 gi\|89109863, gi\|... - gi\|89109863\|ref\|AP_003643.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 subst... EG12739 - hexuronate regulon transcriptional repressor; autorepressor / Hexuronate regulon transcriptional rep... gi\|81246766, gi\|... - gi\|82545355\|ref\|YP_409302.1\| DNA-binding transcriptional repressor ExuR [Shigella boydii Sb227], gi\|... gi\|24114392, gi\|... - gi\|24114392\|ref\|NP_708902.1\| DNA-binding transcriptional repressor ExuR [Shigella flexneri 2a str. 3... gi\|190903113, gi... - gi\|75229986\|ref\|ZP_00716499.1\| COG2186: Transcriptional regulators [Escherichia coli B7A], gi\|191166... gi\|30064441, gi\|... - gi\|30064441\|ref\|NP_838612.1\| DNA-binding transcriptional repressor ExuR [Shigella flexneri 2a str. 2... gi\|194427770, gi... - gi\|75211050\|ref\|ZP_00711163.1\| COG2186: Transcriptional regulators [Escherichia coli B171], gi\|19442... gi\|75197050, gi\|... - gi\|75197050\|ref\|ZP_00707120.1\| COG2186: Transcriptional regulators [Escherichia coli HS], gi\|1571625... gi\|157154963, gi... - gi\|75187907\|ref\|ZP_00701174.1\| COG2186: Transcriptional regulators [Escherichia coli E24377A], gi\|15... gi\|74313646, gi\|... - gi\|74313646\|ref\|YP_312065.1\| DNA-binding transcriptional repressor ExuR [Shigella sonnei Ss046], gi\|... gi\|188496167, gi... - gi\|75513311\|ref\|ZP_00735735.1\| COG2186: Transcriptional regulators [Escherichia coli 53638], gi\|1884... gi\|75260029, gi\|... - gi\|75260029\|ref\|ZP_00731307.1\| COG2186: Transcriptional regulators [Escherichia coli E22], gi\|193062... EXUR_SHIFL - Exu regulon transcriptional regulator OS=Shigella flexneri GN=exuR PE=3 SV=1 gi\|193067456, gi... - gi\|75239333\|ref\|ZP_00723304.1\| COG2186: Transcriptional regulators [Escherichia coli E110019], gi\|19...	1.0E-46	[1..257]	[1..258]
gi\|254038264, gi... - gi\|254038264\|ref\|ZP_04872322.1\| exu regulon regulator [Escherichia sp. 1_1_43], gi\|226839888\|gb\|EEH7... gi\|15833230, gi\|... - gi\|15833230\|ref\|NP_312003.1\| negative regulator of exu regulon [Escherichia coli O157:H7], gi\|133634... gi\|25325756, gi\|... - gi\|7449871\|pir\|\|C65098 exu regulon regulator - Escherichia coli (strain K-12), gi\|606035\|gb\|AAA57898... gi\|606035\|gb\|AAA... - ORF_o263 [Escherichia coli] gi\|15803635, gi\|... - gi\|15803635\|ref\|NP_289668.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB [Escherichia c... gi\|1789480, gi\|1... - gb\|AAC76129.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB; transcriptional repressor f... gi\|15833230, gi\|... - gi\|15833230\|ref\|NP_312003.1\| negative regulator of exu regulon [Escherichia coli O157:H7 str. Sakai]...	1.0E-46	[1..257]	[6..263]
gi\|75178748, gi\|... - gi\|75178748\|ref\|ZP_00698784.1\| COG2186: Transcriptional regulators [Shigella boydii BS512], gi\|18773...	1.0E-46	[1..257]	[1..258]
gi\|161486115 - gi\|161486115\|ref\|NP_755723.2\| DNA-binding transcriptional repressor ExuR [Escherichia coli CFT073] gi\|162138371 - gi\|162138371\|ref\|YP_542509.2\| DNA-binding transcriptional repressor ExuR [Escherichia coli UTI89] gi\|191172213, gi... - gi\|75240871\|ref\|ZP_00724769.1\| COG2186: Transcriptional regulators [Escherichia coli F11], gi\|191172... gi\|218706718, gi... - gi\|218706718\|ref\|YP_002414237.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli UMN026... gi\|218560178, gi... - gi\|218560178\|ref\|YP_002393091.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli S88], ... gi\|218691396, gi... - gi\|218691396\|ref\|YP_002399608.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli ED1a],...	2.0E-46	[1..257]	[1..258]
gi\|26110111, gi\|... - gi\|26249683\|ref\|NP_755723.1\| Exu regulon transcriptional regulator [Escherichia coli CFT073], gi\|261... gi\|117625402, gi... - gi\|117625402\|ref\|YP_858725.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli APEC O1],... gi\|91074097, gi\|... - gi\|91212523\|ref\|YP_542509.1\| exu regulon transcriptional regulator [Escherichia coli UTI89], gi\|9107... gi\|227887819, gi... - gi\|227887819\|ref\|ZP_04005624.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli 83972],... gi\|237706145, gi... - gi\|237706145\|ref\|ZP_04536626.1\| exu regulon transcriptional regulator [Escherichia sp. 3_2_53FAA], g...	2.0E-46	[1..257]	[6..263]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTETRRLY QQLAAELKRR IEAGVYPVGD KLPAERYISE EMNVSRTVVR EAIIMLEVEG  60
   61 YVEVRKGSGI HVMSNQQKHL VTNQGIEFDT AGPFELLQAR QLIESNIAEF AATQVTRQDI 120
  121 VQLIEIQKHA RQEDRFRDSQ WDLKFHVQVA LATQNTAMAT IVEKMWSQRT HNPYWIKLHE 180
  181 HIDDVSIESW CEDHDKILEA LIRKDPHASK LAMWQHLENT KQMLFRATTD DFEFNVDRYL 240
  241 FTENPVVHLD NLMNNSKVPI SSKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.09691
Match:	2di3A
Description:	No description for 2di3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits