YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115346284, gi...
Organism:	Yersinia pestis CO92
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115346284, gi....

Description	E-value	Query Range	Subject Range
LSPA_YERP3 - Lipoprotein signal peptidase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lspA ...	1.0E-48	[1..169]	[1..169]
gi\|77976920 - gi\|77976920\|ref\|ZP_00832385.1\| COG0597: Lipoprotein signal peptidase [Yersinia intermedia ATCC 29909...	2.0E-48	[1..169]	[1..169]
gi\|77976150 - gi\|77976150\|ref\|ZP_00831683.1\| COG0597: Lipoprotein signal peptidase [Yersinia frederiksenii ATCC 33...	2.0E-48	[1..169]	[1..169]
gi\|77959745 - gi\|77959745\|ref\|ZP_00823762.1\| COG0597: Lipoprotein signal peptidase [Yersinia bercovieri ATCC 43970...	4.0E-48	[1..169]	[1..169]
LSPA_SHELP - Lipoprotein signal peptidase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=lspA PE=3 SV=1	9.0E-48	[1..166]	[1..166]
gi\|77961932 - gi\|77961932\|ref\|ZP_00825760.1\| COG0597: Lipoprotein signal peptidase [Yersinia mollaretii ATCC 43969...	1.0E-47	[1..169]	[1..169]
gi\|74277650, gi\|... - gi\|75428558\|ref\|ZP_00731760.1\| Signal peptidase II [Actinobacillus succinogenes 130Z], gi\|74277650\|g...	3.0E-47	[6..166]	[29..189]
gi\|114773698 - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255] gi\|221135354 - gi\|221135354\|ref\|ZP_03561657.1\| signal peptidase II [Glaciecola sp. HTCC2999] gi\|114773698, gi... - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255], gi\|114546093\|g...	6.0E-47	[4..165]	[21..182]
LSPA_ENTAE - Lipoprotein signal peptidase OS=Enterobacter aerogenes GN=lspA PE=3 SV=1 LSPA_ENTAK - Lipoprotein signal peptidase OS=Enterobacter aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / K...	9.0E-47	[1..164]	[1..164]
LSPA_SHIFL - Lipoprotein signal peptidase OS=Shigella flexneri GN=lspA PE=3 SV=1 gi\|30061595, gi\|... - gi\|30061595\|ref\|NP_835766.1\| lipoprotein signal peptidase [Shigella flexneri 2a str. 2457T], gi\|3003... gi\|24050222, gi\|... - gi\|24111472\|ref\|NP_705982.1\| lipoprotein signal peptidase [Shigella flexneri 2a str. 301], gi\|240502...	1.0E-46	[1..163]	[1..163]

Back

Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPICSTGL RWLWLAVVVV ILDISSKQWV MAHFALYESV PLIPFFNLTY AQNFGAAFSF  60
   61 LADKSGWQRW FFAGIAIGIS VVLMVMMYRS TAKQRLINCA YALIIGGALG NLYDRLVHGA 120
  121 VNDFLDFYIN NWHFPTFNLA DVAICIGAAL VIFEGFLSPV EKNAVNNDE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.267606
Match:	PF01252.9
Description:	No description for PF01252.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits