YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21960984, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21960984, gi|....

Description	E-value	Query Range	Subject Range
gi\|77974997 - gi\|77974997\|ref\|ZP_00830534.1\| COG2923: Uncharacterized protein involved in the oxidation of intrace...	2.0E-30	[1..121]	[1..121]
gi\|238727783, gi... - gi\|77978218\|ref\|ZP_00833650.1\| COG2923: Uncharacterized protein involved in the oxidation of intrace...	1.0E-29	[1..121]	[1..121]
gi\|78700533, gi\|... - gi\|78700533\|ref\|ZP_00864989.1\| DsrE protein [Alkalilimnicola ehrlichei MLHE-1], gi\|78522020\|gb\|EAP35...	1.0E-28	[5..121]	[2..117]
TUSC_PHOLL - Protein tusC OS=Photorhabdus luminescens subsp. laumondii GN=tusC PE=3 SV=1 TUSC_PHOLL - Protein TusC OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) GN=...	2.0E-28	[3..121]	[1..119]
gi\|229516033, gi... - gi\|229516033\|ref\|ZP_04405484.1\| tRNA 5-methylaminomethyl-2-thiouridine synthase TusC [Vibrio cholera... gi\|229606361, gi... - gi\|229606361\|ref\|YP_002877009.1\| tRNA 5-methylaminomethyl-2-thiouridine synthase TusC [Vibrio choler... gi\|121628550, gi... - gi\|75814884\|ref\|ZP_00745426.1\| COG2923: Uncharacterized protein involved in the oxidation of intrace... gi\|254847374, gi... - gi\|254851669\|ref\|ZP_05241019.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254847374\|... TUSC_VIBCH - Protein TusC homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=tus... gi\|146316054, gi... - gi\|75828342\|ref\|ZP_00757777.1\| COG2923: Uncharacterized protein involved in the oxidation of intrace... gi\|121546754, gi... - gi\|121591395\|ref\|ZP_01678677.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215467... gi\|153820479, gi... - gi\|153820479\|ref\|ZP_01973146.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|229508651, gi... - gi\|229508651\|ref\|ZP_04398145.1\| tRNA 5-methylaminomethyl-2-thiouridine synthase TusC [Vibrio cholera... Y357_VIBCH, TUSC... - (Q9KV01) UPF0116 protein VC0357, Protein TusC homolog OS=Vibrio cholerae GN=tusC PE=3 SV=1 gi\|227080569, gi... - gi\|227080569\|ref\|YP_002809120.1\| hypothetical protein VCM66_0341 [Vibrio cholerae M66-2], gi\|2270084... gi\|229355952, gi... - gi\|229506847\|ref\|ZP_04396355.1\| tRNA 5-methylaminomethyl-2-thiouridine synthase TusC [Vibrio cholera...	2.0E-28	[3..121]	[1..118]
gi\|88928617, gi\|... - gi\|88948727\|ref\|ZP_01151490.1\| DsrE protein [Halorhodospira halophila SL1], gi\|88928617\|gb\|EAR47578....	3.0E-28	[3..121]	[1..117]
TUSD_VIBVY - Sulfurtransferase TusD homolog OS=Vibrio vulnificus (strain YJ016) GN=tusD PE=3 SV=1	3.0E-28	[1..121]	[1..131]
gi\|54307532, gi\|... - gi\|54307532\|ref\|YP_128552.1\| hypothetical protein PBPRA0311 [Photobacterium profundum SS9], gi\|46911...	7.0E-28	[3..121]	[1..118]
TUSD_VIBVU - Sulfurtransferase TusD homolog OS=Vibrio vulnificus (strain CMCP6) GN=tusD PE=3 SV=1 YD33_VIBVU, TUSD... - (Q8DCR3) Hypothetical UPF0163 protein VV11333, (Q8DCR3) UPF0163 protein VV11333, Sulfurtransferase T...	8.0E-28	[1..121]	[1..131]
gi\|23013192 - gi\|23013192\|ref\|ZP_00053121.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	9.0E-28	[5..121]	[2..117]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKRIAFIF TQGPHGSSAG REGLDALLAT SALSEDIGVF FISDGVLQLL PQQQPEKILA  60
   61 RNYIATFGVL PLYDVENCYL CERSLQQRGL SKMADWILDV TVLSPADLRR ELGTYDVVLT 120
  121 F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	2d1pB
Description:	crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits