YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21960960, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21960960, gi|....

Description	E-value	Query Range	Subject Range
gi\|71735354, gi\|... - gi\|71735354\|ref\|YP_272975.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. phaseolicola 1448A], ...	2.0E-33	[1..134]	[63..201]
gi\|200387904, gi... - gi\|200387904\|ref\|ZP_03214516.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Vir... lcl\|NC_016856.1_... - [gene=yhfA] [protein=hypothetical protein] [protein_id=YP_005239657.1] [location=complement(3628792.... gi\|205274690, gi... - gi\|205354909\|ref\|YP_002228710.1\| hypothetical protein SG3974 [Salmonella enterica subsp. enterica se... gi\|197095790, gi... - gi\|197364313\|ref\|YP_002143950.1\| hypothetical protein SSPA3109 [Salmonella enterica subsp. enterica ... gi\|198242114, gi... - gi\|198242114\|ref\|YP_002217426.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Du... gi\|194450894, gi... - gi\|194450894\|ref\|YP_002047488.1\| hypothetical protein SeHA_C3770 [Salmonella enterica subsp. enteric... gi\|197263035, gi... - gi\|197263035\|ref\|ZP_03163109.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Sai... gi\|56129640, gi\|... - gi\|56415383\|ref\|YP_152458.1\| hypothetical protein SPA3331 [Salmonella enterica subsp. enterica serov... gi\|167994565, gi... - gi\|205327576\|gb\|EDZ14340.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|62181969, gi\|... - gi\|62181969\|ref\|YP_218386.1\| hypothetical protein SC3399 [Salmonella enterica subsp. enterica serova... gi\|168260820, gi... - gi\|205350281\|gb\|EDZ36912.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Hadar s... gi\|238913588 - gi\|238913588\|ref\|ZP_04657425.1\| hypothetical protein SentesTe_20998 [Salmonella enterica subsp. ente... gi\|16422022, gi\|... - gi\|16766753\|ref\|NP_462368.1\| hypothetical protein STM3465 [Salmonella typhimurium LT2], gi\|16422022\|... gi\|206710509, gi... - gi\|207858706\|ref\|YP_002245357.1\| hypothetical protein SEN3292 [Salmonella enterica subsp. enterica s... gi\|224585259, gi... - gi\|224585259\|ref\|YP_002639058.1\| hypothetical protein SPC_3534 [Salmonella enterica subsp. enterica ...	6.0E-33	[1..134]	[1..134]
gi\|238788936, gi... - gi\|77975017\|ref\|ZP_00830554.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	1.0E-32	[1..135]	[1..135]
gi\|37524405, gi\|... - gi\|37524405\|ref\|NP_927749.1\| hypothetical protein plu0396 [Photorhabdus luminescens subsp. laumondii...	1.0E-32	[1..133]	[1..133]
gi\|77958267, gi\|... - gi\|77958267\|ref\|ZP_00822303.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|238797263, gi... - gi\|77962711\|ref\|ZP_00826528.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	1.0E-32	[1..135]	[1..135]
gi\|152961142, gi... - gi\|77631154\|ref\|ZP_00793740.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|186897214, gi... - gi\|186897214\|ref\|YP_001874326.1\| hypothetical protein YPTS_3920 [Yersinia pseudotuberculosis PB1/+],...	2.0E-32	[1..135]	[1..135]
gi\|213418212 - gi\|213418212\|ref\|ZP_03351278.1\| hypothetical protein Salmonentericaenterica_10014 [Salmonella enteri... gi\|213052059 - gi\|213052059\|ref\|ZP_03344937.1\| hypothetical protein Salmoneentericaenterica_03407 [Salmonella enter... gi\|213857516 - gi\|213857516\|ref\|ZP_03384487.1\| hypothetical protein SentesT_20409 [Salmonella enterica subsp. enter... gi\|213649014 - gi\|213649014\|ref\|ZP_03379067.1\| hypothetical protein SentesTy_18073 [Salmonella enterica subsp. ente... gi\|213615727 - gi\|213615727\|ref\|ZP_03371553.1\| hypothetical protein SentesTyp_15119 [Salmonella enterica subsp. ent... gi\|213426763 - gi\|213426763\|ref\|ZP_03359513.1\| hypothetical protein SentesTyphi_14835 [Salmonella enterica subsp. e... gi\|16762819 - gi\|16762819\|ref\|NP_458436.1\| hypothetical protein STY4332 [Salmonella enterica subsp. enterica serov... gi\|16505125, gi\|... - gi\|25306899\|pir\|\|AH1002 conserved hypothetical protein yhfA [imported] - Salmonella enterica subsp. ... gi\|29144306, gi\|... - gi\|29144306\|ref\|NP_807648.1\| hypothetical protein t4040 [Salmonella enterica subsp. enterica serovar... gi\|214000202 - gi\|214000202\|ref\|ZP_03410937.1\| hypothetical protein Salmonellentericaenterica_05911 [Salmonella ent...	2.0E-32	[1..134]	[1..134]
tr\|Q88A00\|Q88A00... - OsmC/Ohr family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0597 PE=4 SV=1 gi\|28867825, gi\|... - gi\|28867825\|ref\|NP_790444.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213967627, gi... - gi\|213967627\|ref\|ZP_03395774.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. tomato T1], gi\|213...	3.0E-32	[1..135]	[1..140]
gi\|238727765, gi... - gi\|77978197\|ref\|ZP_00833629.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	4.0E-32	[1..135]	[1..135]
gi\|15595850, gi\|... - gi\|9946530\|gb\|AAG04042.1\|AE004500_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|94413364, gi\|... - gi\|94413364\|ref\|ZP_01293250.1\| hypothetical protein PaerP_01004877 [Pseudomonas aeruginosa PA7], gi\|... gi\|11347693, gi\|... - gi\|1888564\|gb\|AAC45224.1\| ORFX [Pseudomonas aeruginosa], pir\|\|C83564 conserved hypothetical protein ... gi\|254237155, gi... - gi\|84318828\|ref\|ZP_00967245.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|107099619 - gi\|107099619\|ref\|ZP_01363537.1\| hypothetical protein PaerPA_01000635 [Pseudomonas aeruginosa PACS2] gi\|116054378, gi... - gi\|32043843\|ref\|ZP_00141105.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|194554715, gi... - gi\|84324146\|ref\|ZP_00972210.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|218889376, gi... - gi\|218889376\|ref\|YP_002438240.1\| putative redox protein [Pseudomonas aeruginosa LESB58], gi\|21876959...	5.0E-32	[1..135]	[1..140]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQARVKWVEG LTFLGESASG HQVLMDGNSG DKAPSPMEML LMSAGGCSAI DVVSILQKGR  60
   61 NNVRDCEVKL TSERREEAPR LFTQINLHFI VSGKGLTDKV VERAVDLSAE KYCSVALMLG 120
  121 KAATITHSFE VREVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	1ml8A
Description:	Hypothetical protein in CRP region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0998435033416311	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: