YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22127773, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22127773, gi|....

Description	E-value	Query Range	Subject Range
NFUA_ECOLC - Fe/S biogenesis protein NfuA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nfuA PE=3... gi\|24053889, gi\|... - gi\|24114681\|ref\|NP_709191.1\| putative DNA uptake protein [Shigella flexneri 2a str. 301], gi\|2405388... gi\|30065301, gi\|... - gi\|30065301\|ref\|NP_839472.1\| putative DNA uptake protein [Shigella flexneri 2a str. 2457T], gi\|30043... gi\|227883548, gi... - gi\|227883548\|ref\|ZP_04001353.1\| HesB family protein [Escherichia coli 83972], gi\|227839427\|gb\|EEJ498... NFUA_ECOL6 - Fe/S biogenesis protein NfuA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nfuA ... gi\|237703145, gi... - gi\|237703145\|ref\|ZP_04533626.1\| Fe/S biogenesis protein nfuA [Escherichia sp. 3_2_53FAA], gi\|2269024... gi\|12518044, gi\|... - gi\|15803918\|ref\|NP_289954.1\| putative DNA uptake protein [Escherichia coli O157:H7 EDL933], gi\|12518... NFUA_ECOBW - Fe/S biogenesis protein NfuA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=nfuA PE=3 SV=1 EG12935 - Fe /S biogenesis protein, putative scaffold /chaperone protein / Fe /S biogenesis protein; possible sca... gi\|251786664, gi... - gi\|251786664\|ref\|YP_003000968.1\| hypothetical protein B21_03218 [Escherichia coli BL21], gi\|24237893... gi\|254290092, gi... - gi\|254290092\|ref\|YP_003055840.1\| predicted gluconate transport associated protein [Escherichia coli ... sp\|B7UKB9\|NFUA_ECO27 - Fe/S biogenesis protein nfuA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nfuA PE=3 SV=1 gi\|226839088, gi... - gi\|254038582\|ref\|ZP_04872638.1\| GntY [Escherichia sp. 1_1_43], gi\|226839088\|gb\|EEH71111.1\| GntY [Esc... NFUA_SHIBS - Fe/S biogenesis protein NfuA OS=Shigella boydii serotype 4 (strain Sb227) GN=nfuA PE=3 SV=1 gi\|254163342, gi... - gi\|254163342\|ref\|YP_003046450.1\| predicted gluconate transport associated protein [Escherichia coli ... gi\|85676627, gi\|... - gi\|89110596\|ref\|AP_004376.1\| predicted gluconate transport associated protein [Escherichia coli str.... NFUA_ECOK1 - Fe/S biogenesis protein NfuA OS=Escherichia coli O1:K1 / APEC GN=nfuA PE=3 SV=1 gi\|254594729, gi... - gi\|254795329\|ref\|YP_003080166.1\| predicted gluconate transport associated protein [Escherichia coli ... NFUA_SHISS - Fe/S biogenesis protein NfuA OS=Shigella sonnei (strain Ss046) GN=nfuA PE=3 SV=1 gi\|124528187, gi... - gi\|124528187\|ref\|ZP_01699520.1\| HesB/YadR/YfhF-family protein [Escherichia coli B], gi\|124500842\|gb\|... NFUA_SHIDS - Fe/S biogenesis protein NfuA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nfuA PE=3 SV=1 gi\|75211780, gi\|... - gi\|75211780\|ref\|ZP_00711844.1\| COG0316: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|75229576, gi\|... - gi\|75229576\|ref\|ZP_00716119.1\| COG0316: Uncharacterized conserved protein [Escherichia coli B7A], gi... NFUA_ECO24 - Fe/S biogenesis protein NfuA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nfuA PE=3 SV=1 NFUA_ECOHS - Fe/S biogenesis protein NfuA OS=Escherichia coli O9:H4 (strain HS) GN=nfuA PE=3 SV=1 gi\|193061845, gi... - gi\|75260297\|ref\|ZP_00731565.1\| COG0316: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|75516118, gi\|... - gi\|75516118\|ref\|ZP_00738236.1\| COG0316: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|192957881, gi... - gi\|75237015\|ref\|ZP_00721071.1\| COG0316: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|190908148, gi... - gi\|75241495\|ref\|ZP_00725340.1\| COG0316: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|194435891, gi... - gi\|83588721\|ref\|ZP_00927345.1\| COG0316: Uncharacterized conserved protein [Escherichia coli 101-1], ... NFUA_SHIB3 - Fe/S biogenesis protein NfuA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=nfuA PE=... NFUA_ECOUT - Fe/S biogenesis protein NfuA OS=Escherichia coli (strain UTI89 / UPEC) GN=nfuA PE=3 SV=1 gi\|15833510, gi\|... - gi\|15833510\|ref\|NP_312283.1\| putative DNA uptake protein [Escherichia coli O157:H7 str. Sakai], gi\|1... NFUA_ECOL5 - Fe/S biogenesis protein NfuA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nfuA PE=3 SV=1 NFUA_SHIF8 - Fe/S biogenesis protein NfuA OS=Shigella flexneri serotype 5b (strain 8401) GN=nfuA PE=3 SV=1 NFUA_ESCF3 - Fe/S biogenesis protein NfuA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)... gi\|217322001, gi... - gi\|217325780\|ref\|ZP_03441864.1\| protein GntY [Escherichia coli O157:H7 str. TW14588], gi\|217322001\|g... NFUA_ECO45 - Fe/S biogenesis protein NfuA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nfuA PE=3 SV=1 NFUA_ECO8A - Fe/S biogenesis protein NfuA OS=Escherichia coli O8 (strain IAI1) GN=nfuA PE=3 SV=1 NFUA_ECO55 - Fe/S biogenesis protein NfuA OS=Escherichia coli (strain 55989 / EAEC) GN=nfuA PE=3 SV=1 NFUA_ECO81 - Fe/S biogenesis protein NfuA OS=Escherichia coli O81 (strain ED1a) GN=nfuA PE=3 SV=1 NFUA_ECOLU - Fe/S biogenesis protein NfuA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nfuA PE=3 SV... gi\|195934903 - gi\|195934903\|ref\|ZP_03080285.1\| putative DNA uptake protein [Escherichia coli O157:H7 str. EC4024] gi\|170124421, gi... - gi\|170766983\|ref\|ZP_02901436.1\| protein GntY [Escherichia albertii TW07627], gi\|170124421\|gb\|EDS9335... gi\|208811856, gi... - gi\|208811856\|ref\|ZP_03253185.1\| protein GntY [Escherichia coli O157:H7 str. EC4045], gi\|208733133\|gb... gi\|208809095, gi... - gi\|208809095\|ref\|ZP_03251432.1\| protein GntY [Escherichia coli O157:H7 str. EC4206], gi\|208728896\|gb... NFUA_ECO5E - Fe/S biogenesis protein NfuA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nfuA PE=3 SV=1 gi\|208741178, gi... - gi\|208821055\|ref\|ZP_03261375.1\| protein GntY [Escherichia coli O157:H7 str. EC4042], gi\|208741178\|gb... NFUA_ECO27 - Fe/S biogenesis protein NfuA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nfuA PE=3 SV=1 NFUA_ECOSE - Fe/S biogenesis protein NfuA OS=Escherichia coli (strain SE11) GN=nfuA PE=3 SV=1 EG12935 - Fe /S biogenesis protein, putative scaffold /chaperone protein / Fe /S biogenesis protein; possible sca... gi\|189364704, gi... - gi\|189364704\|gb\|EDU83123.1\| protein GntY [Escherichia coli O157:H7 str. EC4486], gi\|168765762\|ref\|ZP... gi\|189369561, gi... - gi\|189369561\|gb\|EDU87977.1\| protein GntY [Escherichia coli O157:H7 str. EC4501], gi\|168759439\|ref\|ZP... NFUA_SHIFL - Fe/S biogenesis protein NfuA OS=Shigella flexneri GN=nfuA PE=3 SV=1 gi\|168779498, gi... - gi\|189002308\|gb\|EDU71294.1\| protein GntY [Escherichia coli O157:H7 str. EC4076], gi\|168779498\|ref\|ZP... gi\|187771744, gi... - gi\|187771744\|gb\|EDU35588.1\| protein GntY [Escherichia coli O157:H7 str. EC4196], gi\|168772693\|ref\|ZP... gi\|168797185, gi... - gi\|189380102\|gb\|EDU98518.1\| protein GntY [Escherichia coli O157:H7 str. EC508], gi\|168797185\|ref\|ZP_... gi\|189374586, gi... - gi\|189374586\|gb\|EDU93002.1\| protein GntY [Escherichia coli O157:H7 str. EC869], gi\|168785219\|ref\|ZP_... NFUA_ECOSM - Fe/S biogenesis protein NfuA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nfuA PE=3 SV=1 NFUA_ECODH - Fe/S biogenesis protein NfuA OS=Escherichia coli (strain K12 / DH10B) GN=nfuA PE=3 SV=1 GNTY_ECOLI - Protein gntY - Escherichia coli GNTY_ECOL6, NFUA... - Fe/S biogenesis protein nfuA OS=Escherichia coli O6 GN=nfuA PE=3 SV=1, Protein gntY - Escherichia co... gi\|189359050, gi... - gi\|189359050\|gb\|EDU77469.1\| protein GntY [Escherichia coli O157:H7 str. EC4401], gi\|168753167\|ref\|ZP... NFUA_ECO57 - Fe/S biogenesis protein NfuA OS=Escherichia coli O157:H7 GN=nfuA PE=3 SV=1 gi\|188018489, gi... - gi\|188018489\|gb\|EDU56611.1\| protein GntY [Escherichia coli O157:H7 str. EC4113], gi\|168747108\|ref\|ZP...	5.0E-54	[1..191]	[1..191]
NFUA_SODGM - Fe/S biogenesis protein NfuA OS=Sodalis glossinidius (strain morsitans) GN=nfuA PE=3 SV=1	1.0E-53	[1..191]	[1..191]
gi\|32034535 - gi\|32034535\|ref\|ZP_00134699.1\| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu... NFUA_ACTP2 - Fe/S biogenesis protein NfuA OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=nfuA PE=... NFUA_ACTPJ - Fe/S biogenesis protein NfuA OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=nfuA PE=... NFUA_ACTP7 - Fe/S biogenesis protein NfuA OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=nfuA PE=...	1.0E-53	[2..191]	[9..199]
gi\|194430959, gi... - gi\|83571663\|ref\|ZP_00923103.1\| COG0316: Uncharacterized conserved protein [Shigella dysenteriae 1012...	2.0E-53	[1..191]	[1..191]
gi\|238792866, gi... - gi\|77978690\|ref\|ZP_00834116.1\| COG0316: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	4.0E-53	[1..191]	[1..191]
gi\|238788981, gi... - gi\|77975063\|ref\|ZP_00830600.1\| COG0316: Uncharacterized conserved protein [Yersinia frederiksenii AT...	5.0E-53	[1..191]	[1..191]
gi\|204928851, gi... - gi\|204928851\|ref\|ZP_03220050.1\| protein GntY [Salmonella enterica subsp. enterica serovar Javiana st... gi\|199605094, gi... - gi\|200387996\|ref\|ZP_03214608.1\| protein GntY [Salmonella enterica subsp. enterica serovar Virchow st... NFUA_SALDC - Fe/S biogenesis protein NfuA OS=Salmonella dublin (strain CT_02021853) GN=nfuA PE=3 SV=1 gi\|197265281, gi... - gi\|197265281\|ref\|ZP_03165355.1\| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|214000247 - gi\|214000247\|ref\|ZP_03410982.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica ser... NFUA_SALPB - Fe/S biogenesis protein nfuA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nfuA PE=3 SV... gi\|213426878 - gi\|213426878\|ref\|ZP_03359628.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica ser... NFUA_SALCH - Fe/S biogenesis protein nfuA OS=Salmonella choleraesuis GN=nfuA PE=3 SV=1 NFUA_SALEP - Fe/S biogenesis protein NfuA OS=Salmonella enteritidis PT4 (strain P125109) GN=nfuA PE=3 SV=1 NFUA_SALG2 - Fe/S biogenesis protein NfuA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nfuA PE=3 SV=1 NFUA_SALNS - Fe/S biogenesis protein NfuA OS=Salmonella newport (strain SL254) GN=nfuA PE=3 SV=1 gi\|168818674, gi... - gi\|205344656\|gb\|EDZ31420.1\| protein GntY [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|195632440, gi... - gi\|195632440\|gb\|EDX50924.1\| protein GntY [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|168260762, gi... - gi\|205350434\|gb\|EDZ37065.1\| protein GntY [Salmonella enterica subsp. enterica serovar Hadar str. RI_... NFUA_SALA4 - Fe/S biogenesis protein NfuA OS=Salmonella agona (strain SL483) GN=nfuA PE=3 SV=1 NFUA_SALSV - Fe/S biogenesis protein NfuA OS=Salmonella schwarzengrund (strain CVM19633) GN=nfuA PE=3 SV=1 gi\|194472075, gi... - gi\|194472075\|ref\|ZP_03078059.1\| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky s... NFUA_SALHS - Fe/S biogenesis protein NfuA OS=Salmonella heidelberg (strain SL476) GN=nfuA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yhgI] [protein=putative DNA uptake protein] [protein_id=YP_005239714.1] [location=3683336..368... NFUA_SALPC - Fe/S biogenesis protein NfuA OS=Salmonella paratyphi C (strain RKS4594) GN=nfuA PE=3 SV=1 NFUA_SALCH - Fe/S biogenesis protein NfuA OS=Salmonella choleraesuis (strain SC-B67) GN=nfuA PE=3 SV=1 GNTY_SALCH, NFUA... - Fe/S biogenesis protein nfuA OS=Salmonella choleraesuis GN=nfuA PE=3 SV=1, Protein gntY - Salmonella... NFUA_SALTY - Fe/S biogenesis protein NfuA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nfuA... gi\|238910484 - gi\|238910484\|ref\|ZP_04654321.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica ser... NFUA_SALPB - Fe/S biogenesis protein NfuA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nfuA PE=3 SV... gi\|205325543, gi... - gi\|205325543\|gb\|EDZ13382.1\| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str.... GNTY_SALTY, NFUA... - Fe/S biogenesis protein nfuA OS=Salmonella typhimurium GN=nfuA PE=3 SV=1, Protein gntY - Salmonella ... gi\|168241653, gi... - gi\|205338772\|gb\|EDZ25536.1\| protein GntY [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168235106, gi... - gi\|197291455\|gb\|EDY30807.1\| protein GntY [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|205333139, gi... - gi\|205333139\|gb\|EDZ19903.1\| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|205330667, gi... - gi\|205330667\|gb\|EDZ17431.1\| protein GntY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... NFUA_SALTY - Fe/S biogenesis protein nfuA OS=Salmonella typhimurium GN=nfuA PE=3 SV=1	6.0E-53	[1..191]	[1..191]
gi\|213647818 - gi\|213647818\|ref\|ZP_03377871.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica ser... NFUA_SALTI - Fe/S biogenesis protein NfuA OS=Salmonella typhi GN=nfuA PE=3 SV=1 gi\|29144263, gi\|... - gi\|29144263\|ref\|NP_807605.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica serova... gi\|16762776 - gi\|16762776\|ref\|NP_458393.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica serova... GNTY_SALTI, NFUA... - Fe/S biogenesis protein nfuA OS=Salmonella typhi GN=nfuA PE=3 SV=1, Protein gntY - Salmonella typhi gi\|213612531 - gi\|213612531\|ref\|ZP_03370357.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica ser... gi\|213420971 - gi\|213420971\|ref\|ZP_03354037.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica ser... gi\|213023194 - gi\|213023194\|ref\|ZP_03337641.1\| putative DNA uptake protein [Salmonella enterica subsp. enterica ser...	8.0E-53	[1..191]	[1..191]
gi\|238786223, gi... - gi\|77956411\|ref\|ZP_00820512.1\| COG0316: Uncharacterized conserved protein [Yersinia bercovieri ATCC ... gi\|238718947, gi... - gi\|77962663\|ref\|ZP_00826480.1\| COG0316: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	1.0E-52	[1..191]	[1..191]
NFUA_PHOLL - Fe/S biogenesis protein NfuA OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10... Y198_PHOLL, NFUA... - (Q7N9W2) Hypothetical protein plu0198, Fe/S biogenesis protein nfuA OS=Photorhabdus luminescens subs...	1.0E-52	[1..191]	[1..191]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITITDAAQS HFAKLLANQE EGTQIRVFVI NPGTPTAECG VSYCPPDAVE ATDTELKFEQ  60
   61 LSAYVDELSV PYLQDAEIDF VTDQLGSQLT LKAPNAKMRK VDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1r94A
Description:	Crystal Structure of IscA (MERCURY DERIVATIVE)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2 iron, 2 sulfur cluster binding	1.71468673917586	bayes_pls_golite062009
iron-sulfur cluster binding	1.33125375529348	bayes_pls_golite062009
metal cluster binding	1.33125375529348	bayes_pls_golite062009
binding	0.700615110946341	bayes_pls_golite062009
protein binding	0.15305983062661	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [104-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPLMERVEY VLQSQINPQL AGHGGRVTLM EITPEGLAIL QFGGGCNGCS MVDVTLKEGI  60
   61 EKELLQKFPE LKGVRDLTEH QRGEHSYY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1vehA
Description:	Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.788558668229677	bayes_pls_golite062009
2 iron, 2 sulfur cluster binding	0.233615476766167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: