YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13093894, gi\|...
Organism:	Mycobacterium leprae
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13093894, gi|....

Description	E-value	Query Range	Subject Range
PARB_MYCLE - Probable chromosome-partitioning protein parB OS=Mycobacterium leprae GN=parB PE=3 SV=1 PARB_MYCLE - Probable chromosome-partitioning protein ParB OS=Mycobacterium leprae (strain TN) GN=parB PE=3 SV=1	298.0	[0..3]	[335..1]
PARB_MYCTO - Probable chromosome-partitioning protein ParB OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshko... PARB_MYCTU - Probable chromosome-partitioning protein ParB OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37... gi\|134151965, gi... - gi\|254366453\|ref\|ZP_04982497.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis str... gi\|167969455, gi... - gi\|167969455\|ref\|ZP_02551732.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis H37... gi\|224992323, gi... - gi\|224992323\|ref\|YP_002647013.1\| putative chromosome partitioning protein [Mycobacterium bovis BCG s... PARB_MYCBO - Probable chromosome-partitioning protein ParB OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/9... PARB_MYCBO - Probable chromosome-partitioning protein parB OS=Mycobacterium bovis GN=parB PE=3 SV=1 gi\|215425179 - gi\|215425179\|ref\|ZP_03423098.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis T92... gi\|215432898 - gi\|215432898\|ref\|ZP_03430817.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis EAS... gi\|215448264 - gi\|215448264\|ref\|ZP_03435016.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis T85... gi\|218755709 - gi\|218755709\|ref\|ZP_03534505.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis GM ... gi\|253322471, gi... - gi\|253800967\|ref\|YP_003033969.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis KZ... gi\|215405975 - gi\|215405975\|ref\|ZP_03418156.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis 02_... gi\|215413845 - gi\|215413845\|ref\|ZP_03422510.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis 94_... gi\|255094772 - gi\|255094772\|ref\|ZP_05324250.1\| putative chromosome partitioning protein [Mycobacterium tuberculosis... gi\|254548921 - gi\|254548921\|ref\|ZP_05139368.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis '98... PARB_MYCTU - Probable chromosome-partitioning protein ParB OS=Mycobacterium tuberculosis GN=parB PE=3 SV=1 gi\|254817848 - gi\|254817848\|ref\|ZP_05222849.1\| putative chromosome partitioning protein [Mycobacterium tuberculosis... gi\|121639828, gi... - gi\|121639828\|ref\|YP_980052.1\| putative chromosome partitioning protein parB [Mycobacterium bovis BCG... gi\|194542450, gi... - gi\|254233399\|ref\|ZP_04926725.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis C],... gi\|148825125, gi... - gi\|148825125\|ref\|YP_001289879.1\| chromosome partitioning protein parB [Mycobacterium tuberculosis F1...	289.0	[0..3]	[334..1]
gi\|118464564, gi... - gi\|118464564\|ref\|YP_884416.1\| ParB-like partition proteins [Mycobacterium avium 104], gi\|118165851\|g... gi\|41399275, gi\|... - gi\|41410441\|ref\|NP_963277.1\| hypothetical protein MAP4343c [Mycobacterium avium subsp. paratuberculo... gi\|254777654 - gi\|254777654\|ref\|ZP_05219170.1\| ParB-like partition proteins [Mycobacterium avium subsp. avium ATCC ...	277.0	[0..3]	[334..1]
gi\|108772784, gi... - gi\|108802365\|ref\|YP_642562.1\| chromosome segregation DNA-binding protein [Mycobacterium sp. MCS], gi... gi\|119692147, gi... - gi\|92913848\|ref\|ZP_01282476.1\| ParB-like partition protein [Mycobacterium sp. KMS], gi\|92441952\|gb\|E... gi\|92909278, gi\|... - gi\|92909278\|ref\|ZP_01278056.1\| ParB-like partition protein [Mycobacterium sp. JLS], gi\|92433740\|gb\|E...	268.0	[0..3]	[334..1]
gi\|90202214, gi\|... - gi\|90202214\|ref\|ZP_01204860.1\| ParB-like partition protein [Mycobacterium vanbaalenii PYR-1], gi\|901...	262.0	[0..3]	[332..1]
gi\|89319565, gi\|... - gi\|89340314\|ref\|ZP_01192586.1\| ParB-like partition protein [Mycobacterium flavescens PYR-GCK], gi\|89...	259.0	[0..3]	[332..1]
gi\|54019148, gi\|... - gi\|54027640\|ref\|YP_121882.1\| putative chromosome partitioning protein [Nocardia farcinica IFM 10152]...	255.0	[0..5]	[327..1]
gi\|76782518, gi\|... - gi\|76782518\|ref\|ZP_00769723.1\| COG1475: Predicted transcriptional regulators [Mycobacterium tubercul...	252.0	[0..39]	[334..1]
gi\|81252591 - gi\|81252591\|ref\|ZP_00877173.1\| COG1475: Predicted transcriptional regulators [Mycobacterium tubercul...	245.0	[0..58]	[334..1]
gi\|38201174 - gi\|38201174\|emb\|CAE50898.1\| Putative chromosome partitioning protein [Corynebacterium diphtheriae] gi\|38234909 - gi\|38234909\|ref\|NP_940676.1\| putative chromosome partitioning protein [Corynebacterium diphtheriae N...	243.0	[0..9]	[330..6]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMTQSLCKK GGLGRGLASL IPTGPVDADS GPATYGPQMG NTAADVLIGG SAQKDNAMGA  60
   61 VYREIALSDI TENPCQPRQV FDDEAMSELV HSIREFGLLQ PIVVRPASGS CGDTRYQIVM 120
  121 GERRWRAAQQ AGLSFIPAIV RATGDDSMLR DALLENIHRV QLNPLEEAAA YQQLLDEFEV 180
  181 THDELASRIG RSRPLITNMI RLLKLPIPVQ RRVAAGVLSA GHARALLSLE ANPEVQEELA 240
  241 SRIIAEGLSV RATEEAVKLA NHEVNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1vz0A
Description:	Chromosome segregation protein Spo0J from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.895085828217607	bayes_pls_golite062009
DNA binding	0.0408978596954372	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [267-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNREVITPVP QRRKPICMPG LQDVAERLSN AFDTRVMVSL GKRKGKIVVE FSSVDDLQRI  60
   61 VDVMTTYKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	2ntzA
Description:	No description for 2ntzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: