YRC Public Data Repository - Protein Structure Prediction

Protein:	SRP54_MYCLE
Organism:	Mycobacterium leprae TN
Length:	521 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP54_MYCLE.

Description	E-value	Query Range	Subject Range
gi\|41409081, gi\|... - gi\|41409081\|ref\|NP_961917.1\| hypothetical protein MAP2983c [Mycobacterium avium subsp. paratuberculo...	464.0	[0..1]	[519..1]
SRP54_MYCBO - Signal recognition particle protein OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ffh ... SRP54_MYCTO - Signal recognition particle protein OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=ffh... SRP54_MYCTU - Signal recognition particle protein OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ffh... gi\|76783392, gi\|... - gi\|76783392\|ref\|ZP_00770584.1\| COG0541: Signal recognition particle GTPase [Mycobacterium tuberculos... gi\|215428357 - gi\|215428357\|ref\|ZP_03426276.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... gi\|254551987 - gi\|254551987\|ref\|ZP_05142434.1\| putative signal recognition particle protein [Mycobacterium tubercul... gi\|124602065, gi... - gi\|81253051\|ref\|ZP_00877618.1\| COG0541: Signal recognition particle GTPase [Mycobacterium tuberculos... gi\|215404890 - gi\|215404890\|ref\|ZP_03417071.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... gi\|148506912, gi... - gi\|167969545\|ref\|ZP_02551822.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... SR54_MYCTU, SRP5... - Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=1 SV=1, (P66844) Signal ... SRP54_MYCBO, SR5... - Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1, (P66845) Signal recogni... gi\|224991289, gi... - gi\|224991289\|ref\|YP_002645978.1\| putative signal recognition particle protein [Mycobacterium bovis B... gi\|121494445, gi... - gi\|121638797\|ref\|YP_979021.1\| putative signal recognition particle protein ffh [Mycobacterium bovis ... gi\|218754669 - gi\|218754669\|ref\|ZP_03533465.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ... gi\|197738546, gi... - gi\|254365555\|ref\|ZP_04981600.1\| signal recognition particle protein ffh [Mycobacterium tuberculosis ...	460.0	[0..1]	[520..1]
gi\|54026131, gi\|... - gi\|54026131\|ref\|YP_120373.1\| putative signal recognition particle protein [Nocardia farcinica IFM 10...	455.0	[0..1]	[520..1]
gi\|90203603, gi\|... - gi\|90203603\|ref\|ZP_01206248.1\| Signal recognition particle protein [Mycobacterium vanbaalenii PYR-1]...	453.0	[0..1]	[519..1]
gi\|89342023, gi\|... - gi\|89342023\|ref\|ZP_01194264.1\| Signal recognition particle protein [Mycobacterium flavescens PYR-GCK...	453.0	[0..1]	[519..1]
gi\|108798927, gi... - gi\|108798927\|ref\|YP_639124.1\| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium s... gi\|119868042, gi... - gi\|92917432\|ref\|ZP_01286045.1\| Signal recognition particle protein [Mycobacterium sp. KMS], gi\|92438... gi\|92911029, gi\|... - gi\|92911029\|ref\|ZP_01279803.1\| Signal recognition particle protein [Mycobacterium sp. JLS], gi\|92431...	449.0	[0..1]	[519..1]
gi\|110823022, gi... - gi\|111023492\|ref\|YP_706464.1\| signal recognition particle protein [Rhodococcus jostii RHA1], gi\|1108...	437.0	[0..1]	[520..1]
gi\|23493806, gi\|... - gi\|25028521\|ref\|NP_738575.1\| putative signal recognition particle protein [Corynebacterium efficiens...	431.0	[0..1]	[520..1]
gi\|16950584 - gi\|16950584\|gb\|AAL32278.1\| signal recognition particle protein subunit [Arcanobacterium pyogenes]	413.0	[0..1]	[515..1]
gi\|62390895, gi\|... - gi\|62390895\|ref\|YP_226297.1\| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 130...	413.0	[0..1]	[520..1]

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Predicted Domain #1

Region A:
Residues: [1-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFESLSNRLT GVIQGLRGKG RLTDADIEAT TREIRLALFE ADVSLPVVRA FVHRIKERAR  60
   61 GTEVSAALNP AQQIVKIVNE ELIGILGGET RQLAFAKTPP TVVMLAGLQG SGKTTLAGKL 120
  121 AVRLRRQGHT PLLVACDLQR PAAVNQLQVV GERAGVPVFA PHPGASPDSG PGDPVAVASA 180
  181 GLVEARAKHF DVVIVDTAGR LGIDDELMAQ AGAIREAINP DEVLFVLDAM IGQDAVTTAA 240
  241 AFGAGVGFTG VVLTKLDGDA RGGAALSVRE VTGVPILFAT TGEKLDDFDV FHPDRMASRI 300
  301 LGMGDVLSLI EQAEQVFDAE QAEAAAAKIV AGELTLEDFL EQMLAVRKMG LIGNLLGMLP 360
  361 GAGQVKEVLE QVDDKQLDRL QAIIRGMTPQ ERADPKIINA SRRLRIANGS GVTVSEVNQL 420
  421 VDRFFEARKM MSSVLGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	115.0
Match:	2j289
Description:	No description for 2j289 was found.

Predicted Domain #2

Region A:
Residues: [438-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPGMGRKS ATRKSKGGKG KKRARGPTSP KVRSPFGPAR PGMPDMMNMP PSFPDLSQMP  60
   61 DGLNELPPGL AAFDLSKLKF PGKT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits