YRC Public Data Repository - Protein Structure Prediction

Protein:	MSHB_MYCLE
Organism:	Mycobacterium leprae TN
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSHB_MYCLE.

Description	E-value	Query Range	Subject Range
gi\|29606950, gi\|... - gi\|29829841\|ref\|NP_824475.1\| hypothetical protein SAV_3299 [Streptomyces avermitilis MA-4680], gi\|29...	263.0	[0..1]	[300..1]
MCA_STRCO - Mycothiol S-conjugate amidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=mca...	261.0	[0..1]	[300..1]
gi\|62389878, gi\|... - gi\|62389878\|ref\|YP_225280.1\| hypothetical protein cg1127 [Corynebacterium glutamicum ATCC 13032], gi...	253.0	[0..5]	[304..7]
gi\|23492890, gi\|... - gi\|25027608\|ref\|NP_737662.1\| hypothetical protein CE1052 [Corynebacterium efficiens YS-314], gi\|2349...	251.0	[0..5]	[304..4]
gi\|71914585, gi\|... - gi\|72160853\|ref\|YP_288510.1\| hypothetical protein Tfu_0449 [Thermobifida fusca YX], gi\|71914585\|gb\|A...	248.0	[0..1]	[300..1]
gi\|38199783 - gi\|38199783\|emb\|CAE49446.1\| Conserved hypothetical protein [Corynebacterium diphtheriae] gi\|38233523 - gi\|38233523\|ref\|NP_939290.1\| hypothetical protein DIP0927 [Corynebacterium diphtheriae NCTC 13129]	238.0	[0..1]	[300..4]
gi\|111022815, gi... - gi\|111022815\|ref\|YP_705787.1\| N-acetylglucosaminylphosphatidylinositol deacetylase [Rhodococcus jost...	237.0	[0..6]	[304..5]
gi\|113902591, gi... - gi\|145593483\|ref\|YP_001157780.1\| LmbE family protein [Salinispora tropica CNB-440], gi\|145302820\|gb\|...	236.0	[0..1]	[301..1]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETPRLLFV HAHPDDESLS NGATIAHYTS RGAQVQVVTC TLGEEGEVIG DRWAELTVDH  60
   61 ADQLGGYRIF ELTEALRALG VSAPIYLGGA GRWRDSGMRG TAPRRRQRFI DADENEAVGA 120
  121 LVAIIRELRP HVVVTYDPHG GYGHPDHVHT HFITAAAVAS SGVAAGLEVG ADEYPGKPWK 180
  181 VPKFYWSVFA LSAFEAGMNA LQGKDLRPEW TIPPREEFYF GYSDKDIDAV VEATSDVWAA 240
  241 KTAALTAHAT QVVVGPTGRA CALSNNMVMP IFAQEHYVLA AGSAGNRDER GWETDLLAGL 300
  301 CLDGFDAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.09691
Match:	1q7tA
Description:	Rv1170 (MshB) from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits