YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15827535
Organism:	Mycobacterium leprae TN
Length:	369 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15827535.

Description	E-value	Query Range	Subject Range
gi\|11277049, gi\|... - gi\|699153\|gb\|AAA62919.1\| corA [Mycobacterium leprae], pir\|\|T45205 divalent cation transport protein ...	339.0	[0..1]	[369..5]
gi\|215410871 - gi\|215410871\|ref\|ZP_03419679.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|215426548 - gi\|215426548\|ref\|ZP_03424467.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|215430118 - gi\|215430118\|ref\|ZP_03428037.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|218752937 - gi\|218752937\|ref\|ZP_03531733.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|219557130 - gi\|219557130\|ref\|ZP_03536206.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|224989643, gi... - gi\|224989643\|ref\|YP_002644330.1\| putative magnesium and cobalt transport transmembrane protein [Myco... gi\|253799716, gi... - gi\|253799716\|ref\|YP_003032717.1\| hypothetical protein TBMG_02742 [Mycobacterium tuberculosis KZN 143... gi\|254550245 - gi\|254550245\|ref\|ZP_05140692.1\| hypothetical protein Mtube_07264 [Mycobacterium tuberculosis '98-R60... gi\|254815041 - gi\|254815041\|ref\|ZP_05220042.1\| putative magnesium and cobalt transport transmembrane protein [Mycob... gi\|255096019 - gi\|255096019\|ref\|ZP_05325497.1\| putative magnesium and cobalt transport transmembrane protein [Mycob... gi\|15840684, gi\|... - gi\|15840684\|ref\|NP_335721.1\| CorA family transport protein [Mycobacterium tuberculosis CDC1551], gi\|... gi\|121492815, gi... - gi\|121637168\|ref\|YP_977391.1\| putative magnesium and cobalt transport transmembrane protein corA [My... gi\|215403078 - gi\|215403078\|ref\|ZP_03415259.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|76784947, gi\|... - gi\|76784947\|ref\|ZP_00772124.1\| COG0598: Mg2+ and Co2+ transporters [Mycobacterium tuberculosis F11],... gi\|81254856, gi\|... - gi\|81254856\|ref\|ZP_00879359.1\| COG0598: Mg2+ and Co2+ transporters [Mycobacterium tuberculosis C], g... gi\|134149653, gi... - gi\|254364139\|ref\|ZP_04980185.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte...	333.0	[0..1]	[369..1]
gi\|7477938 - pir\|\|F70952 probable corA protein - Mycobacterium tuberculosis (strain H37RV) gi\|15608379, gi\|... - gi\|2695825\|emb\|CAA15895.1\| POSSIBLE MAGNESIUM AND COBALT TRANSPORT TRANSMEMBRANE PROTEIN CORA [Mycob... gi\|148505178, gi... - gi\|148661026\|ref\|YP_001282549.1\| CorA family transport protein [Mycobacterium tuberculosis H37Ra], g...	332.0	[0..1]	[369..1]
gi\|31792432, gi\|... - gi\|31792432\|ref\|NP_854925.1\| magnesium/cobalt transporter CorA [Mycobacterium bovis AF2122/97], gi\|3...	332.0	[0..1]	[369..1]
gi\|9714442, gi\|2... - gi\|9714442\|emb\|CAC01358.1\| putative metal-transport protein [Streptomyces coelicolor A3(2)], gi\|2122...	306.0	[0..1]	[369..3]
gi\|41396998, gi\|... - gi\|41408640\|ref\|NP_961476.1\| hypothetical protein MAP2542 [Mycobacterium avium subsp. paratuberculos... gi\|254774258 - gi\|254774258\|ref\|ZP_05215774.1\| hypothetical protein MaviaA2_06255 [Mycobacterium avium subsp. avium...	305.0	[0..1]	[369..1]
gi\|29606757, gi\|... - gi\|29829649\|ref\|NP_824283.1\| metal-transport protein [Streptomyces avermitilis MA-4680], gi\|29606757...	304.0	[0..1]	[369..3]
gi\|89343035, gi\|... - gi\|89343035\|ref\|ZP_01195265.1\| Magnesium and cobalt transport protein CorA [Mycobacterium flavescens...	302.0	[0..3]	[369..2]
gi\|120405434, gi... - gi\|90205966\|ref\|ZP_01208603.1\| Magnesium and cobalt transport protein CorA [Mycobacterium vanbaaleni...	297.0	[0..3]	[369..2]
gi\|111022960, gi... - gi\|111022960\|ref\|YP_705932.1\| Mg2+/Co2+ transporter [Rhodococcus jostii RHA1], gi\|110822490\|gb\|ABG97...	292.0	[0..3]	[369..2]

Back

Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPGFDPLPE ALRPVTKPRL YTPHVHPIFP PLTEPLVDCG VYVGGHRLPD KYTTYTAALS  60
   61 RVREIELMGN EGFVWIGLHE PEASHMHNVA DVFGLHPLAV EDAVHAHQRP KLERYDDTLF 120
  121 LVLKTVNYVP HESVVLARQI VETGEVMIFV GKNFVVTVRH GEHGELSEVR KRMDTDPEHL 180
  181 RLGSYAVMHA ISDYVVDRYL AVTNLMEGDI DAIEEVAFAP GRKLNVEPIY LLKREVIELR 240
  241 RCVAPLSAAL QRMQTDNKDL ISKELRRYLR DVADHQTEAA DQIASYDDML NSLVQAALAR 300
  301 VGMQQNNDMR KMAAWAGIVA MPTMVAAIYG MNFRFMPELN WTWSYPLVMA GMTIVCLVLY 360
  361 WQFRNRNWL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.522879
Match:	2bbjA
Description:	Crystal structure of the CorA Mg2+ transporter
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits