YRC Public Data Repository - Protein Structure Prediction

Protein:	PSS_MYCLE
Organism:	Mycobacterium leprae TN
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSS_MYCLE.

Description	E-value	Query Range	Subject Range
gi\|118463227, gi... - gi\|118463227\|ref\|YP_883841.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium av... gi\|41410027, gi\|... - gi\|41410027\|ref\|NP_962863.1\| hypothetical protein MAP3929c [Mycobacterium avium subsp. paratuberculo...	191.0	[0..1]	[285..1]
gi\|253797360, gi... - gi\|253797360\|ref\|YP_003030361.1\| CDP-diacylglycerol-serine O-phosphatidyltransferase pssA [Mycobacte... PSS_MYCTU - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium tuberculosis GN=pssA PE=3 SV=2 gi\|255098367 - gi\|255098367\|ref\|ZP_05327845.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter... gi\|119700294, gi... - gi\|148821632\|ref\|YP_001286386.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacte... gi\|254549383 - gi\|254549383\|ref\|ZP_05139830.1\| CDP-diacylglycerol-serine O-phosphatidyltransferase pssA [Mycobacter... gi\|254817398 - gi\|254817398\|ref\|ZP_05222399.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter... PSS_MYCTU - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium tuberculosis (strain ATCC 2561... gi\|218752069 - gi\|218752069\|ref\|ZP_03530865.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter... gi\|167970746, gi... - gi\|167970746\|ref\|ZP_02553023.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter...	188.0	[0..1]	[285..1]
gi\|76785720, gi\|... - gi\|76785720\|ref\|ZP_00772884.1\| COG1183: Phosphatidylserine synthase [Mycobacterium tuberculosis F11]...	188.0	[0..1]	[285..3]
gi\|13879956, gi\|... - gi\|15839824\|ref\|NP_334861.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium tub... gi\|81255742 - gi\|81255742\|ref\|ZP_00880212.1\| COG1183: Phosphatidylserine synthase [Mycobacterium tuberculosis C]	187.0	[0..1]	[285..3]
PSS_MYCBO - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium bovis GN=pssA PE=3 SV=1 gi\|219556255 - gi\|219556255\|ref\|ZP_03535331.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|215444532 - gi\|215444532\|ref\|ZP_03431284.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|224988822, gi... - gi\|224988822\|ref\|YP_002643509.1\| putative CDP-diacylglycerol--serine O-phosphatidyltransferase [Myco... gi\|215409952 - gi\|215409952\|ref\|ZP_03418760.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|215402188 - gi\|215402188\|ref\|ZP_03414369.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|215429259 - gi\|215429259\|ref\|ZP_03427178.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... PSS_MYCTO - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 ... gi\|215425657 - gi\|215425657\|ref\|ZP_03423576.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Mycobacterium ... gi\|197739217, gi... - gi\|254363400\|ref\|ZP_04979446.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter... gi\|121491997, gi... - gi\|121636350\|ref\|YP_976573.1\| putative CDP-diacylglycerol--serine o-phosphatidyltransferase pssA [My... gi\|194542838, gi... - gi\|254230786\|ref\|ZP_04924113.1\| CDP-diacylglycerol-serine o-phosphatidyltransferase pssA [Mycobacter... PSS_MYCBO - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / A...	187.0	[0..1]	[285..1]
gi\|24375077, gi\|... - gi\|24375077\|ref\|NP_719120.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase, putative [Shewane... SO3575 - CDP-diacylglycerol--serine O-phosphatidyltransferase putative	179.0	[0..2]	[264..3]
gi\|78360297, gi\|... - gi\|78367652\|ref\|ZP_00837917.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella sp. ...	176.0	[0..7]	[245..8]
gi\|67159494, gi\|... - gi\|67159494\|ref\|ZP_00420012.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Azotobacter vin... gi\|67159494, gi\|... - gi\|67159494\|ref\|ZP_00420012.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Azotobacter vin...	172.0	[0..6]	[245..33]
gi\|85694935, gi\|... - gi\|85711022\|ref\|ZP_01042082.1\| Phosphatidylserine synthase [Idiomarina baltica OS145], gi\|85694935\|g...	171.0	[0..5]	[253..11]
gi\|109897665, gi... - gi\|76795147\|ref\|ZP_00777582.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Pseudoalteromon...	171.0	[0..9]	[239..5]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRPRSRRA VNLQILPSSM TVLSICAGLT SIRFALEHQP KAAIALIAAA AILDGLDGRV  60
   61 ARILGAESRM GEEIDSLADA VNFGVAPAVV LYATMLSTTP VGWVAVLLYP VCVVLRLARF 120
  121 NALLDDGTQP AYTREFFVGM PAPAGAVSVI GLLALKLQFG AGWWTSTWFL CIWVTGTSML 180
  181 LISRIPMKKM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.0
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [191-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTVSVPPHYA AVFVAMLAIF AAAVVLAPYL LIWVIILTYL CHIPFAIHNQ RWLAAHPEAW  60
   61 DDKFKQQHDA RRAARRACPN RHAVPRLGLL KPGSRSMVRS GLRKPGRRFI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.596	a.28.2	Colicin E immunity proteins
View	Download	0.293	a.42.1	MDM2
View	Download	0.288	a.28.1	ACP-like
View	Download	0.268	a.134.1	Fungal elicitin
View	Download	0.262	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits