YRC Public Data Repository - Protein Structure Prediction

Protein:	YJJK_ECOLI
Organism:	Escherichia coli
Length:	555 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJJK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|53804141, gi\|... - gi\|53804141\|ref\|YP_114232.1\| putative ABC transporter ATP-binding protein [Methylococcus capsulatus ...	542.0	[0..1]	[554..1]
gi\|67545660, gi\|... - gi\|67545660\|ref\|ZP_00423580.1\| ABC transporter [Burkholderia vietnamiensis G4], gi\|67532989\|gb\|EAM29...	542.0	[0..1]	[555..259]
gi\|67099568, gi\|... - gi\|67666885\|ref\|ZP_00464123.1\| ABC transporter [Burkholderia cenocepacia HI2424], gi\|67099568\|gb\|EAM... gi\|67660798, gi\|... - gi\|67660798\|ref\|ZP_00458136.1\| ABC transporter [Burkholderia cenocepacia AU 1054], gi\|67091634\|gb\|EA...	541.0	[0..1]	[555..151]
gi\|78521190, gi\|... - gi\|78701396\|ref\|ZP_00865847.1\| ATPas [Alkalilimnicola ehrlichei MLHE-1], gi\|78521190\|gb\|EAP34446.1\| ...	541.0	[0..1]	[553..1]
gi\|91785336, gi\|... - gi\|91785336\|ref\|YP_560542.1\| putative ABC transporter ATP-binding protein [Burkholderia xenovorans L...	539.0	[0..1]	[555..1]
gi\|93356004, gi\|... - gi\|94312152\|ref\|YP_585362.1\| putative ABC transporter ATP-binding protein [Ralstonia metallidurans C...	534.0	[0..1]	[555..35]
gi\|58001636, gi\|... - gi\|58039222\|ref\|YP_191186.1\| putative ABC transporter ATP-binding protein [Gluconobacter oxydans 621...	534.0	[0..3]	[555..5]
gi\|242314262, gi... - gi\|82534823\|ref\|ZP_00893850.1\| hypothetical protein Bpse110_02003900 [Burkholderia pseudomallei 1106... gi\|84520620, gi\|... - gi\|84520620\|ref\|ZP_01007757.1\| COG0488: ATPase components of ABC transporters with duplicated ATPase... gi\|126445929, gi... - gi\|67647464\|ref\|ZP_00445706.1\| COG0488: ATPase components of ABC transporters with duplicated ATPase... gi\|148024753, gi... - gi\|87314598\|ref\|ZP_01095640.1\| COG0488: ATPase components of ABC transporters with duplicated ATPase... gi\|85063565 - gi\|85063565\|ref\|ZP_01024419.1\| COG0488: ATPase components of ABC transporters with duplicated ATPase... gi\|76809168, gi\|... - gi\|76809168\|ref\|YP_334960.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomallei... gi\|217424758, gi... - gi\|217424758\|ref\|ZP_03456255.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei 576]... gi\|169655216, gi... - gi\|254198476\|ref\|ZP_04904897.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei S13]... gi\|254300733, gi... - gi\|254300733\|ref\|ZP_04968178.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei 406e... gi\|134283267, gi... - gi\|134283267\|ref\|ZP_01769968.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei 305]... gi\|52211090, gi\|... - gi\|53720676\|ref\|YP_109662.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomallei... gi\|53717059, gi\|... - gi\|53717059\|ref\|YP_105281.1\| putative ABC transporter ATP-binding protein [Burkholderia mallei ATCC ... gi\|237813971, gi... - gi\|237813971\|ref\|YP_002898422.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei MSH... gi\|226192984, gi... - gi\|226192984\|ref\|ZP_03788595.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei Paki... gi\|238520538, gi... - gi\|238563543\|ref\|ZP_00438751.2\| ABC transporter, ATP-binding protein [Burkholderia mallei GB8 horse ... gi\|167904446 - gi\|167904446\|ref\|ZP_02491651.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|167912708 - gi\|167912708\|ref\|ZP_02499799.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|124291218, gi... - gi\|124383198\|ref\|YP_001024773.1\| putative ABC transporter ATP-binding protein [Burkholderia mallei N... gi\|167847473 - gi\|167847473\|ref\|ZP_02472981.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|167896061 - gi\|167896061\|ref\|ZP_02483463.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|184211036, gi... - gi\|254180497\|ref\|ZP_04887095.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei 1655... gi\|126228033, gi... - gi\|126454391\|ref\|YP_001067836.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudoma... gi\|157938157, gi... - gi\|254190481\|ref\|ZP_04896989.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei Past... gi\|167920672 - gi\|167920672\|ref\|ZP_02507763.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|194316035, gi... - gi\|254175843\|ref\|ZP_04882502.1\| ABC transporter, ATP-binding protein [Burkholderia mallei ATCC 10399... gi\|254260327, gi... - gi\|254260327\|ref\|ZP_04951381.1\| ABC transporter, ATP-binding protein [Burkholderia pseudomallei 1710... gi\|167004145, gi... - gi\|243060444\|gb\|EES42630.1\| ABC transporter, ATP-binding protein [Burkholderia mallei PRL-20], gi\|16... gi\|167817582 - gi\|167817582\|ref\|ZP_02449262.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|167825985 - gi\|167825985\|ref\|ZP_02457456.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|167721399 - gi\|167721399\|ref\|ZP_02404635.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal... gi\|167741775 - gi\|167741775\|ref\|ZP_02414549.1\| putative ABC transporter ATP-binding protein [Burkholderia pseudomal...	533.0	[0..1]	[555..1]
gi\|62130629, gi\|... - gi\|62182996\|ref\|YP_219413.1\| putative ABC transporter ATP-binding protein [Salmonella enterica subsp...	532.0	[0..1]	[555..1]
gi\|205275076, gi... - gi\|205355295\|ref\|YP_002229096.1\| putative ABC transporter ATP-binding protein [Salmonella enterica s... gi\|206711505, gi... - gi\|207859702\|ref\|YP_002246353.1\| putative ABC transporter ATP-binding protein [Salmonella enterica s... gi\|199605650, gi... - gi\|200388552\|ref\|ZP_03215164.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|204927165, gi... - gi\|204927165\|ref\|ZP_03218367.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|197365273, gi... - gi\|197365273\|ref\|YP_002144910.1\| putative ABC transporter ATP-binding protein [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=yjjK] [protein=putative ABC transporter ATP-binding protein] [protein_id=YP_005240926.1] [loca... gi\|197938747, gi... - gi\|198244231\|ref\|YP_002218452.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. en... gi\|197249939, gi... - gi\|197249939\|ref\|YP_002149524.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. en... gi\|197240914, gi... - gi\|197262659\|ref\|ZP_03162733.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|194402765, gi... - gi\|194444102\|ref\|YP_002043823.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. en... gi\|56130608, gi\|... - gi\|56416351\|ref\|YP_153426.1\| putative ABC transporter ATP-binding protein [Salmonella enterica subsp... gi\|194469367, gi... - gi\|194469367\|ref\|ZP_03075351.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent... gi\|195632583, gi... - gi\|195632583\|gb\|EDX51037.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|205341427, gi... - gi\|205341427\|gb\|EDZ28191.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|167989825, gi... - gi\|205331494\|gb\|EDZ18258.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|205335037, gi... - gi\|205335037\|gb\|EDZ21801.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|238910740 - gi\|238910740\|ref\|ZP_04654577.1\| putative ABC transporter ATP-binding protein [Salmonella enterica su... gi\|161617892, gi... - gi\|161617892\|ref\|YP_001591857.1\| putative ABC transporter ATP-binding protein [Salmonella enterica s... gi\|205323135, gi... - gi\|205323135\|gb\|EDZ10974.1\| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric... gi\|16423147, gi\|... - gi\|16767822\|ref\|NP_463437.1\| putative ABC transporter ATP-binding protein [Salmonella typhimurium LT...	532.0	[0..1]	[555..1]

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Predicted Domain #1

Region A:
Residues: [1-555]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQFVYTMHR VGKVVPPKRH ILKNISLSFF PGAKIGVLGL NGAGKSTLLR IMAGIDKDIE  60
   61 GEARPQPDIK IGYLPQEPQL NPEHTVRESI EEAVSEVVNA LKRLDEVYAL YADPDADFDK 120
  121 LAAEQGRLEE IIQAHDGHNL NVQLERAADA LRLPDWDAKI ANLSGGERRR VALCRLLLEK 180
  181 PDMLLLDEPT NHLDAESVAW LERFLHDFEG TVVAITHDRY FLDNVAGWIL ELDRGEGIPW 240
  241 EGNYSSWLEQ KDQRLAQEAS QEAARRKSIE KELEWVRQGT KGRQSKGKAR LARFEELNST 300
  301 EYQKRNETNE LFIPPGPRLG DKVLEVSNLR KSYGDRLLID DLSFSIPKGA IVGIIGPNGA 360
  361 GKSTLFRMIS GQEQPDSGTI TLGETVKLAS VDQFRDSMDN SKTVWEEVSG GLDIMKIGNT 420
  421 EMPSRAYVGR FNFKGVDQGK RVGELSGGER GRLHLAKLLQ VGGNMLLLDE PTNDLDIETL 480
  481 RALENALLEF PGCAMVISHD RWFLDRIATH ILDYQDEGKV EFFEGNFTEY EEYKKRTLGA 540
  541 DALEPKRIKY KRIAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits