YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30065560, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30065560, gi|....

Description	E-value	Query Range	Subject Range
gi\|81247980, gi\|... - gi\|82546569\|ref\|YP_410516.1\| hypothetical protein SBO_4266 [Shigella boydii Sb227], gi\|81247980\|gb\|A... gi\|157163654, gi... - gi\|157163654\|ref\|YP_001460972.1\| hypothetical protein EcHS_A4433 [Escherichia coli HS], gi\|157069334... gi\|157158116, gi... - gi\|157158116\|ref\|YP_001465689.1\| hypothetical protein EcE24377A_4749 [Escherichia coli E24377A], gi\|... gi\|187731161, gi... - gi\|187731161\|ref\|YP_001882878.1\| hypothetical protein SbBS512_E4719 [Shigella boydii CDC 3083-94], g...	264.0	[0..1]	[142..1]
gi\|254037209, gi... - gi\|254037209\|ref\|ZP_04871286.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684031... gi\|1790633, gi\|4... - gi\|49176470\|ref\|NP_418610.3\| hypothetical protein b4189 [Escherichia coli K12], gb\|AAC77146.1\| orf, ... gi\|1361049, gi\|5... - gi\|537030\|gb\|AAA97085.1\| ORF_f142 [Escherichia coli], gi\|1361049\|pir\|\|S56414 hypothetical 16K protei... gi\|537030\|gb\|AAA... - ORF_f142 [Escherichia coli] gi\|188491004, gi... - gi\|188495805\|ref\|ZP_03003075.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849100...	252.0	[0..1]	[142..1]
gi\|218372872, gi... - gi\|218702886\|ref\|YP_002410515.1\| hypothetical protein ECIAI39_4654 [Escherichia coli IAI39], gi\|2183... gi\|38704242 - gi\|38704242\|ref\|NP_313192.2\| hypothetical protein ECs5165 [Escherichia coli O157:H7 str. Sakai] gi\|218354671, gi... - gi\|218697939\|ref\|YP_002405606.1\| hypothetical protein EC55989_4746 [Escherichia coli 55989], gi\|2183... gi\|218430086, gi... - gi\|218692522\|ref\|YP_002400734.1\| hypothetical protein ECED1_4976 [Escherichia coli ED1a], gi\|2184300... gi\|218561348, gi... - gi\|218561348\|ref\|YP_002394261.1\| hypothetical protein ECS88_4775 [Escherichia coli S88], gi\|21836811... gi\|217325452, gi... - gi\|217325452\|ref\|ZP_03441536.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215267605, gi... - gi\|215489533\|ref\|YP_002331964.1\| hypothetical protein E2348C_4512 [Escherichia coli O127:H6 str. E23... gi\|209914937, gi... - gi\|209921678\|ref\|YP_002295762.1\| hypothetical protein ECSE_4487 [Escherichia coli SE11], gi\|20991493... gi\|191170782, gi... - gi\|191170782\|ref\|ZP_03032334.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190909006\|... gi\|170520443, gi... - gi\|170682725\|ref\|YP_001746584.1\| hypothetical protein EcSMS35_4660 [Escherichia coli SMS-3-5], gi\|17... gi\|168801844, gi... - gi\|189376063\|gb\|EDU94479.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189375113, gi... - gi\|189375113\|gb\|EDU93529.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168760431, gi... - gi\|189368911\|gb\|EDU87327.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|161986381 - gi\|161986381\|ref\|YP_313089.2\| hypothetical protein SSON_4371 [Shigella sonnei Ss046] gi\|161949989 - gi\|161949989\|ref\|YP_405738.2\| hypothetical protein SDY_4358 [Shigella dysenteriae Sd197] gi\|161486367 - gi\|161486367\|ref\|NP_839731.2\| hypothetical protein S4614 [Shigella flexneri 2a str. 2457T] gi\|161486012 - gi\|161486012\|ref\|NP_757124.2\| hypothetical protein c5277 [Escherichia coli CFT073] gi\|161485843 - gi\|161485843\|ref\|NP_710054.2\| hypothetical protein SF4344 [Shigella flexneri 2a str. 301] gi\|161367455 - gi\|161367455\|ref\|NP_290819.2\| hypothetical protein Z5796 [Escherichia coli O157:H7 EDL933] gi\|38704242 - gi\|38704242\|ref\|NP_313192.2\| hypothetical protein ECs5165 [Escherichia coli O157:H7]	201.0	[0..34]	[142..1]
gi\|218363510, gi... - gi\|218556741\|ref\|YP_002389655.1\| hypothetical protein ECIAI1_4422 [Escherichia coli IAI1], gi\|218363... gi\|194426670, gi... - gi\|194426670\|ref\|ZP_03059224.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194415409... gi\|193066019, gi... - gi\|193066019\|ref\|ZP_03047077.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192926342\|... gi\|190904303, gi... - gi\|191165608\|ref\|ZP_03027448.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190904303\|... gi\|161984791 - gi\|161984791\|ref\|YP_410516.2\| hypothetical protein SBO_4266 [Shigella boydii Sb227] gi\|75188900 - gi\|75188900\|ref\|ZP_00702167.1\| hypothetical protein EcolE_01002177 [Escherichia coli E24377A]	199.0	[0..34]	[142..1]
gi\|160866468, gi... - gi\|161505121\|ref\|YP_001572233.1\| hypothetical protein SARI_03255 [Salmonella enterica subsp. arizona... gi\|205274915, gi... - gi\|205355134\|ref\|YP_002228935.1\| hypothetical protein SG4221 [Salmonella enterica subsp. enterica se... gi\|16767625, gi\|... - gi\|16767625\|ref\|NP_463240.1\| putative lipoprotein [Salmonella typhimurium LT2], gi\|16422940\|gb\|AAL23... lcl\|NC_016856.1_... - [gene=yjfO] [protein=putative lipoprotein] [protein_id=YP_005240692.1] [location=complement(4634517....	191.0	[0..34]	[142..1]
gi\|194421519, gi... - gi\|194439520\|ref\|ZP_03071594.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442151... EG12489 - bioflm peroxide resistance protein / Confers peroxide resistance in bioflms, YhcN family; mutants ar... gi\|169891470, gi... - gi\|170083635\|ref\|YP_001732955.1\| hypothetical protein ECDH10B_4384 [Escherichia coli str. K-12 subst... YJFO_ECOLI - UPF0379 lipoprotein yjfO precursor - Escherichia coli gi\|89110909, gi\|... - gi\|89110909\|ref\|AP_004689.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|238903296, gi... - gi\|238903296\|ref\|YP_002929092.1\| hypothetical protein BWG_3901 [Escherichia coli BW2952], gi\|2388604... gi\|75515426 - gi\|75515426\|ref\|ZP_00737583.1\| hypothetical protein Ecol5_01000529 [Escherichia coli 53638] gi\|242379710, gi... - gi\|251787437\|ref\|YP_003001741.1\| hypothetical protein B21_04018 [Escherichia coli BL21], gi\|24237971... gi\|253980175, gi... - gi\|254290868\|ref\|YP_003056616.1\| hypothetical protein ECD_04056 [Escherichia coli BL21(DE3)], gi\|253... gi\|253976019, gi... - gi\|254164118\|ref\|YP_003047226.1\| hypothetical protein ECB_04056 [Escherichia coli B str. REL606], gi... EG12489 - bioflm peroxide resistance protein / Confers peroxide resistance in bioflms, YhcN family; mutants ar...	188.0	[0..34]	[142..1]
gi\|193070865, gi... - gi\|75234262\|ref\|ZP_00718650.1\| hypothetical protein EcolE1_01003812 [Escherichia coli E110019], gi\|1... gi\|170021801, gi... - gi\|170021801\|ref\|YP_001726755.1\| hypothetical protein EcolC_3824 [Escherichia coli ATCC 8739], gi\|16...	186.0	[0..34]	[142..1]
gi\|62182823, gi\|... - gi\|62182823\|ref\|YP_219240.1\| hypothetical protein SC4253 [Salmonella enterica subsp. enterica serova... gi\|56416170, gi\|... - gi\|56416170\|ref\|YP_153245.1\| hypothetical protein SPA4196 [Salmonella enterica subsp. enterica serov... gi\|224586218, gi... - gi\|224586218\|ref\|YP_002640017.1\| hypothetical protein SPC_4526 [Salmonella enterica subsp. enterica ... gi\|197096570, gi... - gi\|197365093\|ref\|YP_002144730.1\| hypothetical protein SSPA3896 [Salmonella enterica subsp. enterica ... gi\|161617650, gi... - gi\|161617650\|ref\|YP_001591615.1\| hypothetical protein SPAB_05513 [Salmonella enterica subsp. enteric...	179.0	[0..34]	[142..1]
gi\|16763196 - gi\|16763196\|ref\|NP_458813.1\| hypothetical protein STY4735 [Salmonella enterica subsp. enterica serov... gi\|29144675, gi\|... - gi\|29144675\|ref\|NP_808017.1\| hypothetical protein t4430 [Salmonella enterica subsp. enterica serovar... gi\|25512196, gi\|... - gi\|25512196\|pir\|\|AC1051 probable exported protein yjfO [imported] - Salmonella enterica subsp. enter...	176.0	[0..34]	[142..1]
gi\|75242421 - gi\|75242421\|ref\|ZP_00726183.1\| hypothetical protein EcolF_01000884 [Escherichia coli F11]	167.0	[0..54]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWVTLSSRFH SKIAYQVTIR EHSPKVKLIR HYTMVSRKRN SVIYRFASLL LVLMLSACSA  60
   61 LQGTPQPAPP VTDHPQEIRR DQTQGLQRIG SVSTMVRGSP DDALAEIRAK AVAAKADYYV 120
  121 VVMVDETIVT GQWYSQAILY RK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.34
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits