YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12519089, gi\|...
Organism:	Escherichia coli O157:H7 str. EDL933
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12519089, gi|....

Description	E-value	Query Range	Subject Range
gi\|254037126, gi... - gi\|254037126\|ref\|ZP_04871203.1\| adiY [Escherichia sp. 1_1_43], gi\|226840232\|gb\|EEH72234.1\| adiY [Esc... gi\|254290800, gi... - gi\|254290800\|ref\|YP_003056548.1\| DNA-binding transcriptional activator [Escherichia coli BL21(DE3)],... gi\|253975951, gi... - gi\|254164050\|ref\|YP_003047158.1\| DNA-binding transcriptional activator [Escherichia coli B str. REL6... EG11966 - adi system transcriptional activator / Transcriptional activator for adiA, AraC family gi\|194423829, gi... - gi\|194437273\|ref\|ZP_03069371.1\| transcriptional regulator AdiY [Escherichia coli 101-1], gi\|19442382... gi\|188489560, gi... - gi\|188494361\|ref\|ZP_03001631.1\| transcriptional regulator AdiY [Escherichia coli 53638], gi\|18848956... ADIY_ECOLI - HTH-type transcriptional regulator adiY - Escherichia coli EG11966 - adi system transcriptional activator / Transcriptional activator for adiA, AraC family gi\|242379643, gi... - gi\|251787370\|ref\|YP_003001674.1\| hypothetical protein B21_03948 [Escherichia coli BL21], gi\|24237964... gi\|89110837, gi\|... - gi\|89110837\|ref\|AP_004617.1\| DNA-binding transcriptional activator [Escherichia coli str. K-12 subst... gi\|238860883, gi... - gi\|238903224\|ref\|YP_002929020.1\| DNA-binding transcriptional activator [Escherichia coli BW2952], gi...	179.0	[0..1]	[253..1]
gi\|16422856, gi\|... - gi\|16767545\|ref\|NP_463160.1\| transcriptional activator [Salmonella typhimurium LT2], gi\|16422856\|gb\|... lcl\|NC_016856.1_... - [gene=adiY] [protein=transcriptional activator] [protein_id=YP_005240602.1] [location=complement(455... gi\|206711252, gi... - gi\|207859449\|ref\|YP_002246100.1\| putative AraC family regulatory protein [Salmonella enterica subsp.... gi\|161366802, gi... - gi\|161617438\|ref\|YP_001591403.1\| hypothetical protein SPAB_05295 [Salmonella enterica subsp. enteric... gi\|205337301, gi... - gi\|205337301\|gb\|EDZ24065.1\| porin thermoregulatory protein EnvY [Salmonella enterica subsp. enterica...	170.0	[0..1]	[253..1]
gi\|62182744, gi\|... - gi\|62182744\|ref\|YP_219161.1\| transcriptional activator of AdiA [Salmonella enterica subsp. enterica ... gi\|224586060, gi... - gi\|224586060\|ref\|YP_002639859.1\| putative AraC family regulatory protein [Salmonella enterica subsp.... gi\|194402546, gi... - gi\|194443883\|ref\|YP_002043545.1\| porin thermoregulatory protein EnvY [Salmonella enterica subsp. ent...	170.0	[0..1]	[253..1]
gi\|16505284, gi\|... - gi\|25326011\|pir\|\|AG1022 probable AraC family regulatory protein STY4494 [imported] - Salmonella ente... gi\|213419526 - gi\|213419526\|ref\|ZP_03352592.1\| putative AraC family regulatory protein [Salmonella enterica subsp. ... gi\|29140102, gi\|... - gi\|29144464\|ref\|NP_807806.1\| AraC family regulatory protein [Salmonella enterica subsp. enterica ser... gi\|213427222 - gi\|213427222\|ref\|ZP_03359972.1\| putative AraC family regulatory protein [Salmonella enterica subsp. ... gi\|213585588 - gi\|213585588\|ref\|ZP_03367414.1\| putative AraC family regulatory protein [Salmonella enterica subsp. ... gi\|213609429 - gi\|213609429\|ref\|ZP_03369255.1\| putative AraC family regulatory protein [Salmonella enterica subsp. ... gi\|16762977 - gi\|16762977\|ref\|NP_458594.1\| AraC family regulatory protein [Salmonella enterica subsp. enterica ser... gi\|197365020, gi... - gi\|197365020\|ref\|YP_002144657.1\| putative AraC family regulatory protein [Salmonella enterica subsp.... gi\|213161960 - gi\|213161960\|ref\|ZP_03347670.1\| putative AraC family regulatory protein [Salmonella enterica subsp. ... gi\|214002531 - gi\|214002531\|ref\|ZP_03413266.1\| putative AraC family regulatory protein [Salmonella enterica subsp. ... gi\|56416094, gi\|... - gi\|56416094\|ref\|YP_153169.1\| AraC family regulatory protein [Salmonella enterica subsp. enterica ser...	169.0	[0..1]	[253..1]
gi\|50590983, gi\|... - gi\|81097031\|ref\|ZP_00875347.1\| Helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisat...	150.0	[0..5]	[250..38]
gi\|142856325, gi... - gi\|145301443\|ref\|YP_001144282.1\| ExsA transcriptional regulator [Aeromonas salmonicida subsp. salmon... gi\|66947977 - gi\|66947977\|emb\|CAE83114.1\| ExsA protein [Aeromonas salmonicida subsp. salmonicida]	147.0	[0..3]	[244..25]
gi\|46118176, gi\|... - gi\|67925376\|ref\|ZP_00518726.1\| Helix-turn-helix, AraC type [Crocosphaera watsonii WH 8501], gi\|67852...	146.0	[0..3]	[244..19]
gi\|15901726, gi\|... - gi\|66877103\|ref\|ZP_00402748.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Streptococ... gi\|25389448 - pir\|\|A95222 msm operon regulatory protein [imported] - Streptococcus pneumoniae (strain TIGR4) gi\|225725782, gi... - gi\|225857488\|ref\|YP_002738999.1\| Msm operon regulatory protein [Streptococcus pneumoniae P1031], gi\|... gi\|149013558, gi... - gi\|149013558\|ref\|ZP_01834165.1\| msm operon regulatory protein [Streptococcus pneumoniae SP19-BS75], ... gi\|220675097, gi... - gi\|221232635\|ref\|YP_002511789.1\| AraC family regulatory protein [Streptococcus pneumoniae ATCC 70066...	145.0	[0..5]	[249..35]
gi\|32396734, gi\|... - gi\|32471032\|ref\|NP_864025.1\| L-rhamnose operon transcriptional activator [Rhodopirellula baltica SH ...	144.0	[0..3]	[248..35]
gi\|25509235 - pir\|\|H98085 hypothetical protein msmR [imported] - Streptococcus pneumoniae (strain R6) gi\|116077109, gi... - gi\|116516533\|ref\|YP_817128.1\| msm operon regulatory protein MsmR [Streptococcus pneumoniae D39], gi\|... gi\|15903756, gi\|... - gi\|15903756\|ref\|NP_359306.1\| MSM (multiple sugar metabolism) operon regulatory protein [Streptococcu... gi\|182630177, gi... - gi\|182684843\|ref\|YP_001836590.1\| msm operon regulatory protein [Streptococcus pneumoniae CGSP14], gi...	143.0	[0..5]	[249..35]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRICSDQPCI VLLTEKDVWI RVNGKEPISL KANHMALLNC ENNIIDVSSL NNTLVAHISH  60
   61 DIIKDYLRFL NKDLSQIPVW QRSATPILTL PCLTPDVFRV AAQHSMMPAE TESEKERTRA 120
  121 LLFTVLSRFL DSKKFLSLMM YM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1xjaA
Description:	Apo form of the Y31V mutant dimerization domain fragment of Escherichia coli regulatory protein AraC
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [143-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRNCVSDSVY QIIESDIHKD WNLSMVASCL CLSPSLLKKK LKSENTSYSQ IITTCRMRYA  60
   61 VNELMMDGKN ISQVSQSCGY NSTSYFISVF KDFYGMTPLH YVSQHRERTV A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1wpkA
Description:	Methylated Form of N-terminal Transcriptional Regulator Domain of Escherichia Coli Ada Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits