YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15834343, gi\|...
Organism:	Escherichia coli O157:H7
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15834343, gi|....

Description	E-value	Query Range	Subject Range
gi\|209921596, gi... - gi\|209921596\|ref\|YP_002295680.1\| hypothetical protein ECSE_4405 [Escherichia coli SE11], gi\|20991485... gi\|218354541, gi... - gi\|218697809\|ref\|YP_002405476.1\| hypothetical protein EC55989_4597 [Escherichia coli 55989], gi\|2183... gi\|193067814, gi... - gi\|75238636\|ref\|ZP_00722625.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191169266, gi... - gi\|75227424\|ref\|ZP_00714196.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157069252, gi... - gi\|75197959\|ref\|ZP_00708029.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75188823, gi\|... - gi\|75188823\|ref\|ZP_00702090.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c...	158.0	[0..1]	[147..1]
gi\|85676859, gi\|... - gi\|89110828\|ref\|AP_004608.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|124527746, gi... - gi\|124527746\|ref\|ZP_01699181.1\| Glyoxalase/bleomycin resistance protein/dioxygenase [Escherichia col... PHNB_ECOLI - Protein phnB - Escherichia coli EG10712 - metalloprotein superfamily protein / Metalloprotein superfamily protein, function unknown gi\|194437212, gi... - gi\|83587231\|ref\|ZP_00925860.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|169891394, gi... - gi\|170083559\|ref\|YP_001732879.1\| hypothetical protein ECDH10B_4299 [Escherichia coli str. K-12 subst... gi\|170021894, gi... - gi\|170021894\|ref\|YP_001726848.1\| hypothetical protein EcolC_3920 [Escherichia coli ATCC 8739], gi\|16... EG10712 - metalloprotein superfamily protein / Metalloprotein superfamily protein, function unknown gi\|251787361, gi... - gi\|251787361\|ref\|YP_003001665.1\| hypothetical protein B21_03939 [Escherichia coli BL21], gi\|24237963... gi\|253980098, gi... - gi\|254290791\|ref\|YP_003056539.1\| hypothetical protein ECD_03978 [Escherichia coli BL21(DE3)], gi\|253... gi\|253975942, gi... - gi\|254164041\|ref\|YP_003047149.1\| hypothetical protein ECB_03978 [Escherichia coli B str. REL606], gi...	158.0	[0..1]	[147..1]
gi\|254037117, gi... - gi\|254037117\|ref\|ZP_04871194.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684022... gi\|188488897, gi... - gi\|75514866\|ref\|ZP_00737095.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192931321, gi... - gi\|75259026\|ref\|ZP_00730394.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218556659, gi... - gi\|218556659\|ref\|YP_002389573.1\| hypothetical protein ECIAI1_4336 [Escherichia coli IAI1], gi\|218363... gi\|75212036, gi\|... - gi\|75212036\|ref\|ZP_00712091.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c...	157.0	[0..1]	[147..1]
gi\|26250922, gi\|... - gi\|26250922\|ref\|NP_756962.1\| hypothetical protein c5112 [Escherichia coli CFT073], gi\|26111354\|gb\|AA... gi\|227836197, gi... - gi\|227886855\|ref\|ZP_04004660.1\| phnB protein [Escherichia coli 83972], gi\|227836197\|gb\|EEJ46663.1\| p...	156.0	[0..1]	[147..1]
gi\|110644464, gi... - gi\|110644464\|ref\|YP_672194.1\| hypothetical protein ECP_4349 [Escherichia coli 536], gi\|110346056\|gb\|... gi\|170517846, gi... - gi\|170680128\|ref\|YP_001746500.1\| putative phnB protein [Escherichia coli SMS-3-5], gi\|170517846\|gb\|A... gi\|75241156, gi\|... - gi\|75241156\|ref\|ZP_00725030.1\| COG2764: Uncharacterized protein conserved in bacteria [Escherichia c...	154.0	[0..1]	[146..1]
gi\|17431071 - gi\|17431071\|emb\|CAD17752.1\| putative glyoxalase/bleomycin resistance protein/dioxygenase [Ralstonia ... gi\|17548822 - gi\|17548822\|ref\|NP_522162.1\| hypothetical protein RSp0601 [Ralstonia solanacearum GMI1000]	154.0	[0..1]	[142..1]
gi\|54030969, gi\|... - gi\|91790597\|ref\|YP_551549.1\| 3-demethylubiquinone-9 3-methyltransferase [Polaromonas sp. JS666], gi\|...	152.0	[0..1]	[141..1]
gi\|74021576, gi\|... - gi\|89902868\|ref\|YP_525339.1\| 3-demethylubiquinone-9 3-methyltransferase [Rhodoferax ferrireducens T1...	151.0	[0..1]	[138..1]
gi\|111280010, gi... - gi\|111619589\|ref\|ZP_01406598.1\| Glyoxalase/bleomycin resistance protein/dioxygenase:3-demethylubiqui...	149.0	[0..1]	[142..29]
gi\|30138591, gi\|... - gi\|30248974\|ref\|NP_841044.1\| hypothetical protein NE0971 [Nitrosomonas europaea ATCC 19718], gi\|3013...	149.0	[0..3]	[142..6]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSPYLSFA GNCSDAIAYY QRTLGAELLY KISFGEMPKS AQDSAENCPS GMQFPDTAIA  60
   61 HANVRIAGSD IMMSDAIPSG KASYSGFTLV LDSQQVEEGK RWFDNLAANG KIEMAWQETF 120
  121 WAHGFGKVTD KFGVPWMINV VKQQPTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1u6lA
Description:	crystal structure of a hypothetical protein from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.21778090213032	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: