YRC Public Data Repository - Protein Structure Prediction

Protein:	RL11_ECOLI
Organism:	Escherichia coli
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL11_ECOLI.

Description	E-value	Query Range	Subject Range
RL11_ALKEH - 50S ribosomal protein L11 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	3.0E-53	[1..141]	[1..141]
gi\|88812768, gi\|... - gi\|88812768\|ref\|ZP_01128014.1\| ribosomal protein L11 [Nitrococcus mobilis Nb-231], gi\|88790006\|gb\|EA...	6.0E-53	[1..141]	[1..141]
RL11_HALHL - 50S ribosomal protein L11 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplK PE=3 SV=1	9.0E-53	[1..141]	[1..141]
RL11_CHRSD - 50S ribosomal protein L11 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	2.0E-51	[1..141]	[1..141]
RL11_CHRVO - 50S ribosomal protein L11 OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / N... RL11_CHRVO - 50S ribosomal protein L11 OS=Chromobacterium violaceum GN=rplK PE=3 SV=1	2.0E-51	[1..141]	[1..141]
RL11_THICR - 50S ribosomal protein L11 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplK PE=3 SV=1	9.0E-51	[1..141]	[1..141]
RL11_MARHV - 50S ribosomal protein L11 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	9.0E-51	[1..141]	[1..141]
RL11_ALCBS - 50S ribosomal protein L11 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 /...	9.0E-51	[1..141]	[1..141]
RL11_HAHCH - 50S ribosomal protein L11 OS=Hahella chejuensis (strain KCTC 2396) GN=rplK PE=3 SV=1	1.0E-50	[1..142]	[1..142]
gi\|90417546, gi\|... - gi\|90417546\|ref\|ZP_01225467.1\| ribosomal protein L11 [marine gamma proteobacterium HTCC2207], gi\|903... gi\|90417546\|ref\|... - ribosomal protein L11 [marine gamma proteobacterium HTCC2207]	1.0E-50	[1..141]	[1..141]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKVQAYVK LQVAAGMANP SPPVGPALGQ QGVNIMEFCK AFNAKTDSIE KGLPIPVVIT  60
   61 VYADRSFTFV TKTPPAAVLL KKAAGIKSGS GKPNKDKVGK ISRAQLQEIA QTKAADMTGA 120
  121 DIEAMTRSIE GTARSMGLVV ED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.154902
Match:	1vs6I
Description:	No description for 1vs6I was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.48853326749311	bayes_pls_golite062009
structural molecule activity	8.91295112573357	bayes_pls_golite062009
binding	1.24107701233598	bayes_pls_golite062009
nucleic acid binding	0.584475746847092	bayes_pls_golite062009
RNA binding	0.569786512924389	bayes_pls_golite062009
protein binding	0.566747114628174	bayes_pls_golite062009
translation regulator activity	0.37140962719814	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: