YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16131128, gi\|...
Organism:	Escherichia coli K-12
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16131128, gi|....

Description	E-value	Query Range	Subject Range
gi\|83585391 - gi\|83585391\|ref\|ZP_00924037.1\| hypothetical protein Ecol1_01003369 [Escherichia coli 101-1]	137.0	[0..1]	[104..1]
gi\|110616648, gi... - gi\|110807100\|ref\|YP_690620.1\| hypothetical protein SFV_3265 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114525, gi\|... - gi\|24114525\|ref\|NP_709035.1\| hypothetical protein SF3278 [Shigella flexneri 2a str. 301], gi\|2405371... gi\|30042829, gi\|... - gi\|30064570\|ref\|NP_838741.1\| hypothetical protein S3493 [Shigella flexneri 2a str. 2457T], gi\|300428...	135.0	[0..1]	[104..1]
gi\|74313769, gi\|... - gi\|74313769\|ref\|YP_312188.1\| hypothetical protein SSON_3380 [Shigella sonnei Ss046], gi\|73857246\|gb\|...	132.0	[0..1]	[104..1]
gi\|82545533, gi\|... - gi\|82545533\|ref\|YP_409480.1\| hypothetical protein SBO_3151 [Shigella boydii Sb227], gi\|81246944\|gb\|A...	130.0	[0..1]	[104..1]
Q66F82\|Q66F82_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|166961442, gi... - gi\|167420636\|ref\|ZP_02312389.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167049260, gi... - gi\|167401235\|ref\|ZP_02306735.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167470484 - gi\|167470484\|ref\|ZP_02335188.1\| hypothetical protein YpesF_21987 [Yersinia pestis FV-1] gi\|167423526, gi... - gi\|167423526\|ref\|ZP_02315279.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|25321953 - pir\|\|AG0427 probable exported protein YPO3518 [imported] - Yersinia pestis (strain CO92) gi\|186893819, gi... - gi\|186893819\|ref\|YP_001870931.1\| hypothetical protein YPTS_0488 [Yersinia pseudotuberculosis PB1/+],... gi\|170025978, gi... - gi\|170025978\|ref\|YP_001722483.1\| hypothetical protein YPK_3763 [Yersinia pseudotuberculosis YPIII], ... gi\|45435276, gi\|... - gi\|45440419\|ref\|NP_991958.1\| hypothetical protein YP_0565 [Yersinia pestis biovar Microtus str. 9100... gi\|22124580, gi\|... - gi\|22124580\|ref\|NP_668003.1\| hypothetical protein y0666 [Yersinia pestis KIM], gi\|21957382\|gb\|AAM842... gi\|15981442, gi\|... - gi\|218930532\|ref\|YP_002348407.1\| hypothetical protein YPO3518 [Yersinia pestis CO92], gi\|16123664\|re... gi\|229679667, gi... - gi\|229903897\|ref\|ZP_04519010.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229679667\|g... gi\|51588092, gi\|... - gi\|51594810\|ref\|YP_069001.1\| hypothetical protein YPTB0458 [Yersinia pseudotuberculosis IP 32953], g... gi\|165928179, gi... - gi\|165928179\|ref\|ZP_02224011.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165937563, gi... - gi\|89104087\|ref\|ZP_01176641.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia pestis biovar Orien... gi\|166214029, gi... - gi\|166214029\|ref\|ZP_02240064.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|108777979, gi... - gi\|108806066\|ref\|YP_649982.1\| hypothetical protein YPA_0068 [Yersinia pestis Antiqua], gi\|108777979\|... gi\|166011384, gi... - gi\|166011384\|ref\|ZP_02232282.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229695537, gi... - gi\|229839171\|ref\|ZP_04459330.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|229896660, gi... - gi\|229896660\|ref\|ZP_04511827.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970043... gi\|229899735, gi... - gi\|229899735\|ref\|ZP_04514876.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|162352278, gi... - gi\|77634760\|ref\|ZP_00796854.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia pestis Angola], gi\|... gi\|149288932, gi... - gi\|153997295\|ref\|ZP_02022395.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149288932\|... gi\|145600814, gi... - gi\|145600814\|ref\|YP_001164890.1\| hypothetical protein YPDSF_3567 [Yersinia pestis Pestoides F], gi\|1... gi\|152959945, gi... - gi\|153948450\|ref\|YP_001402572.1\| hypothetical protein YpsIP31758_3618 [Yersinia pseudotuberculosis I...	112.0	[0..18]	[104..1]
gi\|77958770 - gi\|77958770\|ref\|ZP_00822798.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia bercovieri ATCC 439...	110.0	[0..18]	[104..1]
gi\|238792999, gi... - gi\|77977602\|ref\|ZP_00833046.1\| COG0214: Pyridoxine biosynthesis enzyme [Yersinia intermedia ATCC 299...	109.0	[0..18]	[104..1]
gi\|238787573, gi... - gi\|77973997\|ref\|ZP_00829540.1\| hypothetical protein YfreA_01002143 [Yersinia frederiksenii ATCC 3364...	108.0	[0..18]	[104..1]
gi\|81240263, gi\|... - gi\|82776115\|ref\|YP_402462.1\| hypothetical protein SDY_0791 [Shigella dysenteriae Sd197], gi\|81240263...	107.0	[0..14]	[104..45]
gi\|56129545, gi\|... - gi\|56415288\|ref\|YP_152363.1\| hypothetical protein SPA3228 [Salmonella enterica subsp. enterica serov... gi\|207858609, gi... - gi\|207858609\|ref\|YP_002245260.1\| hypothetical protein SEN3194 [Salmonella enterica subsp. enterica s... gi\|205274043, gi... - gi\|205354262\|ref\|YP_002228063.1\| hypothetical protein SG3251 [Salmonella enterica subsp. enterica se... gi\|197364218, gi... - gi\|197364218\|ref\|YP_002143855.1\| hypothetical protein SSPA3014 [Salmonella enterica subsp. enterica ... gi\|194401699, gi... - gi\|194443036\|ref\|YP_002042616.1\| protein YhcN [Salmonella enterica subsp. enterica serovar Newport s... gi\|205322503, gi... - gi\|205322503\|gb\|EDZ10342.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|161616380, gi... - gi\|161616380\|ref\|YP_001590345.1\| hypothetical protein SPAB_04189 [Salmonella enterica subsp. enteric...	107.0	[0..18]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHETKAQLK DYVEVKIMKI KTTVAALSVL SVLSFGAFAA DSIDAAQAQN REAIGTVSVS  60
   61 GVASSPMDMR EMLNKKAEEK GATAYQITEA RSGDTWHATA ELYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.09691
Match:	2jnaA
Description:	No description for 2jnaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits