YRC Public Data Repository - Protein Structure Prediction

Protein:	YGFQ_ECOLI
Organism:	Escherichia coli
Length:	455 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGFQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	247.0	[0..3]	[451..124]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	230.0	[0..7]	[451..13]
gi\|46912456, gi\|... - gi\|54308030\|ref\|YP_129050.1\| putative xanthine/uracil permease family protein [Photobacterium profun...	230.0	[0..11]	[451..45]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	229.0	[0..16]	[451..18]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	229.0	[0..2]	[451..13]
gi\|153837736, gi... - gi\|153837736\|ref\|ZP_01990403.1\| guanine-hypoxanthine permease [Vibrio parahaemolyticus AQ3810], gi\|1... gi\|28805658, gi\|... - gi\|28897446\|ref\|NP_797051.1\| hypothetical protein VP0672 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28805658 - gi\|28805658\|dbj\|BAC58935.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	225.0	[0..17]	[452..1]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	225.0	[0..13]	[451..19]
gi\|84386832, gi\|... - gi\|84386832\|ref\|ZP_00989857.1\| putative transporter [Vibrio splendidus 12B01], gi\|84378360\|gb\|EAP952...	225.0	[0..1]	[451..11]
gi\|91225076, gi\|... - gi\|91225076\|ref\|ZP_01260298.1\| hypothetical protein V12G01_12650 [Vibrio alginolyticus 12G01], gi\|91...	224.0	[0..17]	[452..1]

Back

Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDILQTPD APKPQGALDN YFKITARGST VRQEVLAGLT TFLAMVYSVI VVPGMLGKAG  60
   61 FPPAAVFVAT CLVAGFGSLL MGLWANLPMA IGCAISLTAF TAFSLVLGQQ ISVPVALGAV 120
  121 FLMGVIFTAI SVTGVRTWIL RNLPMGIAHG TGIGIGLFLL LIAANGVGMV IKNPI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [176-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGLPVALGAF TSFPVMMSLL GLAVIFGLEK CRVPGGILLV IIAISIIGLI FDPAVKYHGL  60
   61 VAMPSLTGED GKSLIFSLDI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [256-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGALQPTVLP SVLALVMTAV FDATGTIRAV AGQANLLDKD NQIINGGKAL TSDSVSSIFS  60
   61 GLVGAAPAAV YIESAAGTAA GGKTGLTATV VGALFLLILF LSPLSFLIPG YATAPALMYV 120
  121 GLLMLSNVSK LDFNDFIDAM AGLVCAVFIV LTCNIVTGIM LGFVTLVVGR VFAREWQKLN 180
  181 IGTVIITAAL VAFYAGGWAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits