YRC Public Data Repository - Protein Structure Prediction

Protein:	HYCI_ECOLI
Organism:	Escherichia coli
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HYCI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|311538, gi\|628534 - pir\|\|S39401 hydrogenase maturation factor hupD [similarity] - Bradyrhizobium japonicum, gi\|311538\|em...	167.0	[0..2]	[153..9]
HUPD_BRAJA - Hydrogenase expression/formation protein hupD OS=Bradyrhizobium japonicum GN=hupD PE=3 SV=2 HUPD_BRADU - Hydrogenase expression/formation protein HupD OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / I...	164.0	[0..2]	[153..9]
gi\|78195775, gi\|... - gi\|78224520\|ref\|YP_386267.1\| peptidase M52, hydrogenase maturation peptidase [Geobacter metallireduc...	163.0	[0..1]	[156..1]
gi\|83376049 - gi\|83376049\|gb\|ABC17830.1\| HupD [Bradyrhizobium sp. UPM1029]	162.0	[0..2]	[155..10]
gi\|83368436, gi\|... - gi\|83368436\|ref\|ZP_00913299.1\| Peptidase M52, hydrogen uptake protein:Peptidase M52, hydrogenase exp...	159.0	[0..2]	[152..8]
gi\|77958666 - gi\|77958666\|ref\|ZP_00822696.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Yersinia bercovieri ATC...	158.0	[0..4]	[151..10]
HUPD_RHILV - Hydrogenase expression/formation protein HupD OS=Rhizobium leguminosarum bv. viciae GN=hupD PE=3 SV=... gi\|536801 - gi\|536801\|emb\|CAA85433.1\| HUPD [Rhizobium leguminosarum]	157.0	[0..2]	[155..14]
gi\|82778085, gi\|... - gi\|82778085\|ref\|YP_404434.1\| hydrogenase 3 maturation protease [Shigella dysenteriae Sd197], gi\|8124...	157.0	[0..1]	[155..1]
lcl\|NC_016856.1_... - [gene=hycI] [protein=hydrogenase 3 maturation protease] [protein_id=YP_005238949.1] [location=comple... gi\|16421391, gi\|... - gi\|16766151\|ref\|NP_461766.1\| hydrogenase 3 maturation protease [Salmonella typhimurium LT2], gi\|1642... gi\|205353789, gi... - gi\|205353789\|ref\|YP_002227590.1\| hydrogenase 3 maturation protease [Salmonella enterica subsp. enter... gi\|207858108, gi... - gi\|207858108\|ref\|YP_002244759.1\| hydrogenase 3 maturation protease [Salmonella enterica subsp. enter... gi\|198243338, gi... - gi\|198243338\|ref\|YP_002216817.1\| hydrogenase maturation peptidase HycI [Salmonella enterica subsp. e... gi\|204322503, gi... - gi\|204928181\|ref\|ZP_03219381.1\| hydrogenase maturation peptidase HycI [Salmonella enterica subsp. en... gi\|167994149, gi... - gi\|205327939\|gb\|EDZ14703.1\| hydrogenase maturation peptidase HycI [Salmonella enterica subsp. enteri... gi\|168464029, gi... - gi\|195633313\|gb\|EDX51727.1\| hydrogenase maturation peptidase HycI [Salmonella enterica subsp. enteri... gi\|161936219 - gi\|161936219\|ref\|YP_151872.2\| hydrogenase 3 maturation protease [Salmonella enterica subsp. enterica...	157.0	[0..1]	[155..1]
gi\|62128981, gi\|... - gi\|62181348\|ref\|YP_217765.1\| hydrogenase 3 maturation protease [Salmonella enterica subsp. enterica ... gi\|224584622, gi... - gi\|224584622\|ref\|YP_002638420.1\| hydrogenase 3 maturation protease [Salmonella enterica subsp. enter...	157.0	[0..1]	[155..1]

Back

Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVLLCVGN SMMGDDGAGP LLAEKCAAAP KGNWVVIDGG SAPENDIVAI RELRPTRLLI  60
   61 VDATDMGLNP GEIRIIDPDD IAEMFMMTTH NMPLNYLIDQ LKEDIGEVIF LGIQPDIVGF 120
  121 YYPMTQPIKD AVETVYQRLE GWEGNGGFAQ LAVEEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.30103
Match:	2i8lA
Description:	No description for 2i8lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits