YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1788858, gi\|1...
Organism:	Escherichia coli K-12
Length:	503 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1788858, gi|1....

Description	E-value	Query Range	Subject Range
gi\|226901387, gi... - gi\|237705021\|ref\|ZP_04535502.1\| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA], gi\|226901387\|g... gi\|91211837, gi\|... - gi\|91211837\|ref\|YP_541823.1\| probable GTP-binding protein EngA [Escherichia coli UTI89], gi\|91073411... gi\|115513864, gi... - gi\|117624740\|ref\|YP_853653.1\| GTP-binding protein EngA [Escherichia coli APEC O1], gi\|115513864\|gb\|A...	468.0	[0..1]	[503..1]
gi\|26248875, gi\|... - gi\|26248875\|ref\|NP_754915.1\| GTP-binding protein EngA [Escherichia coli CFT073], gi\|26109281\|gb\|AAN8...	468.0	[0..1]	[503..1]
gi\|81242044, gi\|... - gi\|82777896\|ref\|YP_404245.1\| putative GTP-binding factor [Shigella dysenteriae Sd197], gi\|81242044\|g...	466.0	[0..1]	[503..1]
gi\|74313037, gi\|... - gi\|74313037\|ref\|YP_311456.1\| putative GTP-binding factor [Shigella sonnei Ss046], gi\|73856514\|gb\|AAZ...	465.0	[0..1]	[503..1]
gi\|81246371, gi\|... - gi\|82544960\|ref\|YP_408907.1\| putative GTP-binding factor [Shigella boydii Sb227], gi\|81246371\|gb\|ABB... gi\|24113840, gi\|... - ref\|NP_708350.1\| putative GTP-binding factor [Shigella flexneri 2a str. 301], gb\|AAN44057.1\| putati...	465.0	[0..1]	[503..1]
DER_SHIB3 - GTPase Der OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=der PE=3 SV=1	458.0	[0..14]	[503..1]
DER_ECOL6, ENGA_... - GTP-binding protein engA OS=Escherichia coli O6 GN=engA PE=3 SV=2, GTPase Der OS=Escherichia coli O6... gi\|191172582, gi... - gi\|75240464\|ref\|ZP_00724398.1\| COG1160: Predicted GTPases [Escherichia coli F11], gi\|191172582\|ref\|Z... DER_ECOL5 - GTPase Der OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=der PE=3 SV=1 DER_ECOL6 - GTPase Der OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=der PE=3 SV=2 DER_ECO7I - GTPase Der OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=der PE=3 SV=1	458.0	[0..14]	[503..1]
DER_SHIF8 - GTPase Der OS=Shigella flexneri serotype 5b (strain 8401) GN=der PE=3 SV=1 gi\|30042158, gi\|... - gi\|30063903\|ref\|NP_838074.1\| GTP-binding protein EngA [Shigella flexneri 2a str. 2457T], gi\|30042158...	458.0	[0..14]	[503..1]
EG14207 - GTPase; multicopy suppressor of ftsJ / Multicopy suppressor of ftsJ, GTPase, ribosome biogenesis; de... ENGA_ECOLI - GTP-binding protein engA (Double era-like domain protein) - Escherichia coli DER_ECO5E - GTPase Der OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=der PE=3 SV=1 gi\|208741557, gi... - gi\|208821434\|ref\|ZP_03261754.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC404... gi\|217319280, gi... - gi\|217326913\|ref\|ZP_03442996.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW145... DER_ECOSE - GTPase Der OS=Escherichia coli (strain SE11) GN=der PE=3 SV=1 gi\|124498697, gi... - gi\|124531251\|ref\|ZP_01701593.1\| small GTP-binding protein [Escherichia coli B], gi\|124498697\|gb\|EAY4... DER_ECO55 - GTPase Der OS=Escherichia coli (strain 55989 / EAEC) GN=der PE=3 SV=1 DER_ECO8A - GTPase Der OS=Escherichia coli O8 (strain IAI1) GN=der PE=3 SV=1 gi\|192929261, gi... - gi\|75257935\|ref\|ZP_00729409.1\| COG1160: Predicted GTPases [Escherichia coli E22], gi\|193064026\|ref\|Z... gi\|75515850, gi\|... - gi\|75515850\|ref\|ZP_00737985.1\| COG1160: Predicted GTPases [Escherichia coli 53638], gi\|188494621\|ref... EG14207 - GTPase; multicopy suppressor of ftsJ / Multicopy suppressor of ftsJ, GTPase, ribosome biogenesis; de... gi\|89109317, gi\|... - gi\|89109317\|ref\|AP_003097.1\| predicted GTP-binding protein [Escherichia coli str. K-12 substr. W3110... gi\|194437572, gi... - gi\|83586840\|ref\|ZP_00925471.1\| COG1160: Predicted GTPases [Escherichia coli 101-1], gi\|194437572\|ref... DER_ECO24 - GTPase Der OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=der PE=3 SV=1 DER_ECOHS - GTPase Der OS=Escherichia coli O9:H4 (strain HS) GN=der PE=3 SV=1 gi\|194414623, gi... - gi\|75211477\|ref\|ZP_00711567.1\| COG1160: Predicted GTPases [Escherichia coli B171], gi\|194427302\|ref\|... gi\|75229157, gi\|... - gi\|75229157\|ref\|ZP_00715729.1\| COG1160: Predicted GTPases [Escherichia coli B7A], gi\|191167672\|ref\|Z... DER_ECOLC - GTPase Der OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=der PE=3 SV=1 DER_ECO57 - GTPase Der OS=Escherichia coli O157:H7 GN=der PE=3 SV=1 gi\|168773575, gi... - gi\|187770576\|gb\|EDU34420.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196], ... DER_ECOBW - GTPase Der OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=der PE=3 SV=1 gi\|168768603, gi... - gi\|189362188\|gb\|EDU80607.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486], ... gi\|251785836, gi... - gi\|251785836\|ref\|YP_003000140.1\| hypothetical protein B21_02365 [Escherichia coli BL21], gi\|24237810... gi\|168787857, gi... - gi\|189372347\|gb\|EDU90763.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869], g... gi\|254289246, gi... - gi\|254289246\|ref\|YP_003054994.1\| GTP-binding protein EngA [Escherichia coli BL21(DE3)], gi\|253978553... gi\|189003270, gi... - gi\|189003270\|gb\|EDU72256.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076], ... gi\|253974386, gi... - gi\|254162485\|ref\|YP_003045593.1\| GTP-binding protein EngA [Escherichia coli B str. REL606], gi\|25397... DER_ECODH - GTPase Der OS=Escherichia coli (strain K12 / DH10B) GN=der PE=3 SV=1 gi\|254794457, gi... - gi\|254794457\|ref\|YP_003079294.1\| 50S ribosome associated factor involved in the biogenesis and stabi... gi\|168798882, gi... - gi\|189378586\|gb\|EDU97002.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508], g... gi\|208814338, gi... - gi\|208814338\|ref\|ZP_03255667.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC404... gi\|195936653 - gi\|195936653\|ref\|ZP_03082035.1\| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC4024] gi\|161367551 - gi\|161367551\|ref\|NP_289064.2\| GTP-binding protein EngA [Escherichia coli O157:H7 EDL933] gi\|188017037, gi... - gi\|188017037\|gb\|EDU55159.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113], ... gi\|162139766 - gi\|162139766\|ref\|NP_311400.2\| GTP-binding protein EngA [Escherichia coli O157:H7 str. Sakai] gi\|189368460, gi... - gi\|189368460\|gb\|EDU86876.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501], ... gi\|168756283, gi... - gi\|189356591\|gb\|EDU75010.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401], ...	457.0	[0..14]	[503..1]
gi\|194432132, gi... - gi\|83570731\|ref\|ZP_00922174.1\| COG1160: Predicted GTPases [Shigella dysenteriae 1012], gi\|194432132\|...	457.0	[0..14]	[503..1]

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Predicted Domain #1

Region A:
Residues: [1-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCLMIYKNE ALNMVPVVAL VGRPNVGKST LFNRLTRTRD ALVADFPGLT RDRKYGRAEI  60
   61 EGREFICIDT GGIDGTEDGV ETRMAEQSLL AIEEADVVLF MVDARAGLMP ADEAIAKHLR 120
  121 SREKPTFLVA NKTDGLDPDQ AVVDFYSLGL GEIYPIAASH GRGVLSLLEH VLLPWMEDLA 180
  181 PQEEVDEDAE YWAQFEAEEN GEEEEEDDFD PQSLPIKLAI VGRPNVGKST LTNRILGEER 240
  241 VVVYDMPGTT RDSIYIPMER DGREYVLIDT AGVRKRGKIT DAVEKFSVIK TLQAIEDANV 300
  301 VMLVIDAREG ISDQDLSLLG FILNSGRSLV IVVNKWDGLS QEVKEQVKET LDFRLGFIDF 360
  361 ARVHFISALH GSGVGNLFES VREAYDSSTR RVGTSMLTRI MTMAVEDHQP PLVRGRRVKL 420
  421 KYAHAGGYNP PIVVIHGNQV KDLPDSYKRY LMNYFRKSLD VMGSPIRIQF KEGENPYANK 480
  481 RNTLTPTQMR KRKRLMKHIK KNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits